Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 3.7e-249 865.1 718 100.0
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 5.2e-195 685.3 715 89.1
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 5.2e-179 632.1 720 85.0
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 1.6e-175 620.5 723 84.6
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 2.0e-154 550.4 715 79.6
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.9e-133 480.7 719 75.0
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 1.3e-132 478.0 719 74.8
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 1.5e-130 471.1 732 73.4
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 1.4e-128 464.5 640 80.2
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 4.6e-119 433.0 717 71.7
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 1.3e-118 431.4 617 79.9
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 1.3e-116 424.9 705 73.5
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 3.2e-112 410.2 372 61.0
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 3.2e-112 410.2 625 77.0
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 3.0e-110 403.7 673 73.0
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 3.0e-110 403.7 714 71.6
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 6.7e-110 402.5 677 73.4
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 1.8e-107 394.4 719 70.0
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 1.2e-106 391.7 720 66.9
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.2e-106 391.7 667 73.0
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 2.6e-106 390.6 687 67.4
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 1.7e-105 387.9 682 71.6
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 2.2e-105 387.5 620 76.3
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 5.0e-105 386.3 705 70.8
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 2.5e-104 384.0 704 70.3
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 9.4e-104 382.1 685 70.5
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 2.1e-103 380.9 698 70.1
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 4.7e-103 379.8 621 76.0
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 1.8e-102 377.9 695 70.4
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 3.0e-102 377.1 721 69.1
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 6.7e-102 375.9 625 70.6
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.5e-101 374.8 703 69.7
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.5e-101 374.8 718 68.5
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 1.5e-101 374.8 376 57.7
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 2.0e-101 374.4 618 65.9
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 2.6e-101 374.0 719 68.7
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 1.7e-100 371.3 701 69.3
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 2.8e-100 370.5 716 68.4
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 6.3e-100 369.4 708 68.4
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 1.8e-99 367.9 722 67.0
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 4.1e-99 366.7 619 75.1
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 9.1e-99 365.5 678 68.9
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 1.2e-98 365.2 711 68.4
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 2.6e-98 364.0 624 74.2
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 4.5e-98 363.2 629 73.4
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 5.9e-98 362.8 400 79.0
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 6.5e-97 359.4 623 73.4
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 1.5e-96 358.2 454 70.3
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 1.6e-95 354.8 715 67.4
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 2.1e-95 354.4 671 70.3
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 3.6e-95 353.6 549 80.5
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 2.6e-93 347.4 721 67.1
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 1.7e-92 344.7 713 66.5
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 2.2e-92 344.4 710 66.6
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 2.2e-92 344.4 714 66.8
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 4.8e-92 343.2 702 66.5
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 3.1e-91 340.5 621 72.0
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 9.1e-91 339.0 712 64.2
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 1.3e-89 335.1 278 61.9
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 1.7e-89 334.7 426 69.7
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 1.7e-89 334.7 709 67.8
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 2.9e-89 334.0 716 62.2
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 3.8e-89 333.6 709 66.0
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 5.0e-89 333.2 661 69.7
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 2.5e-88 330.9 711 66.8
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 1.6e-87 328.2 623 73.5
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 2.7e-87 327.4 656 68.0
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 2.7e-87 327.4 620 71.3
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 3.6e-87 327.0 682 67.7
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 8.0e-87 325.9 629 71.5
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.0e-86 325.5 715 66.0
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 1.4e-86 325.1 722 60.9
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 5.2e-86 323.2 733 65.3
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 6.8e-86 322.8 697 65.9
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 2.2e-84 317.8 715 66.6
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 1.1e-83 315.5 320 53.1
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 4.1e-83 313.5 461 55.7
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 5.4e-83 313.2 619 65.9
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 9.1e-83 312.4 619 65.1
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 1.2e-82 312.0 619 65.8
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 2.0e-82 311.2 619 65.3
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 7.7e-82 309.3 706 61.8
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 1.5e-80 305.1 700 61.0
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 5.5e-80 303.1 402 68.7
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 7.2e-80 302.8 464 63.4
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 3.6e-79 300.4 666 64.1
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 5.7e-77 293.1 363 47.7
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 5.7e-77 293.1 547 74.2
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 9.8e-77 292.4 711 63.7
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 1.3e-76 292.0 375 45.9
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 1.3e-76 292.0 707 64.4
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 2.8e-76 290.8 547 74.2
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 2.4e-75 287.7 422 58.3
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 2.4e-75 287.7 501 82.4
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 1.3e-68 265.4 199 62.8
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 8.3e-68 262.7 666 64.4
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 5.6e-64 250.0 503 80.7
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 2.6e-53 214.5 343 61.5
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 2.5e-48 198.0 505 73.3
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 1.1e-46 192.6 486 77.6
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 2.0e-45 188.3 235 91.5
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 2.4e-43 181.4 541 65.2
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 1.5e-40 172.2 180 56.1
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 6.6e-33 146.7 121 60.3
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 2.9e-28 131.3 235 33.6
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 1.2e-21 109.4 241 29.0
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 7.9e-18 96.7 81 56.8
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 1.1e-16 92.8 78 55.1
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 2.5e-16 91.7 73 61.6
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 6.2e-15 87.0 73 56.2
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 1.3e-12 79.3 74 50.0
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 3.2e-11 74.7 64 57.8
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 1.6e-10 72.4 117 45.3
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 3.5e-10 71.2 54 63.0
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 4.3e-08 64.3 145 25.5
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 5.7e-08 63.9 157 28.7
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 3.7e-07 61.2 143 27.3
RcHm_v2.0_Chr7g0184831 Rosa chinensis HOM05D002453 ORTHO05D008746 1.1e-06 59.7 117 29.1
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 2.4e-06 58.5 166 25.3
Haze_16431 Corylus avellana HOM05D006749 ORTHO05D008352 3.1e-06 58.2 108 30.6
MBI04_g22013_MAGBIO Magnolia biondii HOM05D006749 ORTHO05D008352 3.1e-06 58.2 110 28.2
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 4.1e-06 57.8 254 23.2
Hma1.2p1_0217F.1_g092060 Hydrangea macrophylla HOM05D007322 ORTHO05D009029 4.1e-06 57.8 152 23.0
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 5.3e-06 57.4 165 21.8
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 5.3e-06 57.4 159 24.5
Prupe.8G139200 Prunus persica HOM05D003056 ORTHO05D003422 5.3e-06 57.4 135 24.4
CBR_g38428 Chara braunii HOM05D006217 ORTHO05D021269 6.9e-06 57.0 106 30.2
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 6.9e-06 57.0 145 20.7
Sc10g0007430 Simmondsia chinensis HOM05D006749 ORTHO05D008352 9.0e-06 56.6 123 30.1


User provided reference genes

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