Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G029100 Phaseolus vulgaris HOM05D002009 ORTHO05D003696 1.1e-51 206.5 110 100.0
Phvul.005G019000 Phaseolus vulgaris HOM05D002009 ORTHO05D005728 1.7e-12 76.3 49 81.6
VMungo1309G0642 Vigna mungo HOM05D002009 ORTHO05D005728 1.7e-12 76.3 49 81.6
Phvul.009G155200 Phaseolus vulgaris HOM05D002009 ORTHO05D005728 6.4e-12 74.3 49 79.6
Actinidia06606 Actinidia chinensis HOM05D002009 ORTHO05D005728 1.1e-11 73.6 49 77.6
Rhsim10G0131800 Rhododendron simsii HOM05D002009 ORTHO05D005728 1.1e-11 73.6 49 77.6
Glyma.04G210700 Glycine max HOM05D002009 ORTHO05D005728 1.4e-11 73.2 49 77.6
Ah.06g190900 Amaranthus hybridus HOM05D002009 ORTHO05D005728 2.4e-11 72.4 49 75.5
MSTRG.23471 Avicennia marina HOM05D002009 ORTHO05D005728 2.4e-11 72.4 49 75.5
Ciclev10000086m.g Citrus clementina HOM05D002009 ORTHO05D005728 2.4e-11 72.4 49 75.5
Cc07_g18900 Coffea canephora HOM05D002009 ORTHO05D005728 2.4e-11 72.4 63 66.7
Dinv34360 Davidia involucrata HOM05D002009 ORTHO05D005728 2.4e-11 72.4 49 75.5
Duzib268G1329 Durio zibethinus HOM05D002009 ORTHO05D005728 2.4e-11 72.4 49 75.5
Gohir.A13G139100 Gossypium hirsutum HOM05D002009 ORTHO05D005728 2.4e-11 72.4 49 75.5
Gohir.D13G143900 Gossypium hirsutum HOM05D002009 ORTHO05D005728 2.4e-11 72.4 49 75.5
Gorai.013G160900 Gossypium raimondii HOM05D002009 ORTHO05D005728 2.4e-11 72.4 49 75.5
TWI31G0245 Tripterygium wilfordii HOM05D002009 ORTHO05D005728 2.4e-11 72.4 49 75.5
Atru.chr4.962 Acer truncatum HOM05D002009 ORTHO05D005728 3.2e-11 72.0 48 77.1
CAN.G128.115 Capsicum annuum HOM05D002009 ORTHO05D005728 3.2e-11 72.0 49 75.5
Ca_16976_v3 Cicer arietinum L. HOM05D002009 ORTHO05D005728 3.2e-11 72.0 49 75.5
Migut.E01506 Erythranthe guttata HOM05D002009 ORTHO05D005728 3.2e-11 72.0 47 76.6
Glyma.06G155300 Glycine max HOM05D002009 ORTHO05D005728 3.2e-11 72.0 49 75.5
Manes.12G077400 Manihot esculenta HOM05D002009 ORTHO05D005728 3.2e-11 72.0 47 76.6
Medtr3g096525 Medicago truncatula HOM05D002009 ORTHO05D005728 3.2e-11 72.0 49 75.5
Oeu058301.1 Olea europaea HOM05D002009 ORTHO05D005728 3.2e-11 72.0 49 75.5
Psat5g060760 Pisum sativum HOM05D002009 ORTHO05D005728 3.2e-11 72.0 49 75.5
Prupe.4G273600 Prunus persica HOM05D002009 ORTHO05D005728 3.2e-11 72.0 49 75.5
TPR.G28192 Trifolium pratense HOM05D002009 ORTHO05D005728 3.2e-11 72.0 49 75.5
CSS0020069 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D005728 4.2e-11 71.6 49 75.5
Lsat_1_v5_gn_5_68921 Lactuca sativa HOM05D002009 ORTHO05D005728 4.2e-11 71.6 49 73.5
Solyc10g081250.3 Solanum lycopersicum HOM05D002009 ORTHO05D005728 4.2e-11 71.6 49 75.5
SGA_v2.0_scaffold273G46462 Striga asiatica HOM05D002009 ORTHO05D005728 4.2e-11 71.6 47 76.6
GSVIVG01026455001 Vitis vinifera HOM05D002009 ORTHO05D005728 4.2e-11 71.6 49 73.5
Eucgr.I00173 Eucalyptus grandis HOM05D002009 ORTHO05D005728 5.4e-11 71.2 49 73.5
FvH4_1g24660 Fragaria vesca HOM05D002009 ORTHO05D005728 5.4e-11 71.2 49 73.5
FAN19G2450 Fragaria x ananassa HOM05D002009 ORTHO05D005728 5.4e-11 71.2 49 73.5
FAN26G3211 Fragaria x ananassa HOM05D002009 ORTHO05D005728 5.4e-11 71.2 49 73.5
FAN28G0184 Fragaria x ananassa HOM05D002009 ORTHO05D005728 5.4e-11 71.2 49 73.5
Lalb_Chr23g0272641 Lupinus albus HOM05D002009 ORTHO05D005728 5.4e-11 71.2 49 73.5
Nitab4.5_0000062g0530 Nicotiana tabacum HOM05D002009 ORTHO05D005728 5.4e-11 71.2 49 73.5
Peaxi162Scf00153g00816 Petunia axillaris HOM05D002009 ORTHO05D005728 5.4e-11 71.2 49 73.5
RcHm_v2.0_Chr2g0122111 Rosa chinensis HOM05D002009 ORTHO05D005728 5.4e-11 71.2 49 73.5
Hund07251 Selenicereus undatus HOM05D002009 ORTHO05D005728 5.4e-11 71.2 49 73.5
DCAR_001198 Daucus carota HOM05D002009 ORTHO05D005728 7.1e-11 70.9 49 73.5
Sc16g0009480 Simmondsia chinensis HOM05D002009 ORTHO05D005728 7.1e-11 70.9 49 73.5
Thecc.07G044100 Theobroma cacao HOM05D002009 ORTHO05D005728 7.1e-11 70.9 47 74.5
TAR376G0128 Trochodendron aralioides HOM05D002009 ORTHO05D005728 7.1e-11 70.9 49 73.5
arahy.Tifrunner.gnm1.ann1.7D624Q Arachis hypogaea HOM05D002009 ORTHO05D005728 9.3e-11 70.5 49 71.4
arahy.Tifrunner.gnm1.ann1.BG9WT0 Arachis hypogaea HOM05D002009 ORTHO05D005728 9.3e-11 70.5 49 71.4
CANSAT01G2904 Cannabis sativa HOM05D002009 ORTHO05D005728 9.3e-11 70.5 49 73.5
AUR62000499 Chenopodium quinoa HOM05D002009 ORTHO05D005728 9.3e-11 70.5 49 73.5
Haze_25289 Corylus avellana HOM05D002009 ORTHO05D005728 9.3e-11 70.5 49 73.5
Nitab4.5_0003690g0060 Nicotiana tabacum HOM05D002009 ORTHO05D005728 9.3e-11 70.5 49 71.4
THA.LOC104818425 Tarenaya hassleriana HOM05D002009 ORTHO05D005728 9.3e-11 70.5 47 74.5
EL10Ac4g09604 Beta vulgaris HOM05D002009 ORTHO05D005728 1.2e-10 70.1 49 73.5
CiPaw.03G119300 Carya illinoinensis HOM05D002009 ORTHO05D005728 1.2e-10 70.1 49 73.5
FAN23G2639 Fragaria x ananassa HOM05D002009 ORTHO05D005728 1.2e-10 70.1 49 71.4
HanXRQChr12g0380541 Helianthus annuus HOM05D002009 ORTHO05D005728 1.2e-10 70.1 48 72.9
SHI11495 Sapria himalayana HOM05D002009 ORTHO05D005728 1.2e-10 70.1 47 74.5
Sopen10g031750 Solanum pennellii HOM05D002009 ORTHO05D005728 1.2e-10 70.1 49 73.5
Cpa.g.sc42.182 Carica papaya HOM05D002009 ORTHO05D005728 1.6e-10 69.7 49 71.4
Sed0004291 Sechium edule HOM05D002009 ORTHO05D005728 1.6e-10 69.7 49 71.4
Cfa002919 Carpinus fangiana HOM05D002009 ORTHO05D005728 2.1e-10 69.3 49 71.4
AUR62006845 Chenopodium quinoa HOM05D002009 ORTHO05D005728 2.1e-10 69.3 49 71.4
ClCG01G015100 Citrullus lanatus HOM05D002009 ORTHO05D005728 2.1e-10 69.3 49 71.4
COL.COLO4_09630 Corchorus olitorius HOM05D002009 ORTHO05D005728 2.1e-10 69.3 49 71.4
MELO3C024596.2 Cucumis melo HOM05D002009 ORTHO05D005728 2.1e-10 69.3 49 71.4
Lj2C610T1 Lonicera japonica HOM05D002009 ORTHO05D005728 2.1e-10 69.3 49 73.5
A06p30580 Brassica napus HOM05D002009 ORTHO05D005728 3.5e-10 68.6 49 69.4
C03p62380 Brassica napus HOM05D002009 ORTHO05D005728 3.5e-10 68.6 49 69.4
BolC3t18498H Brassica oleracea HOM05D002009 ORTHO05D005728 3.5e-10 68.6 49 69.4
BraA06t26010Z Brassica rapa HOM05D002009 ORTHO05D005728 3.5e-10 68.6 49 69.4
Migut.B00967 Erythranthe guttata HOM05D002009 ORTHO05D005728 3.5e-10 68.6 51 68.6
MD00G1053300 Malus domestica HOM05D002009 ORTHO05D005728 3.5e-10 68.6 47 74.5
Nn033s41620 Nelumbo nucifera HOM05D002009 ORTHO05D005728 3.5e-10 68.6 49 71.4
Nn5g28479 Nelumbo nucifera HOM05D002009 ORTHO05D005728 3.5e-10 68.6 49 71.4
Potri.005G065800 Populus trichocarpa HOM05D002009 ORTHO05D005728 3.5e-10 68.6 46 73.9
Sabra05G0054400 Salix brachista HOM05D002009 ORTHO05D005728 3.5e-10 68.6 46 73.9
Aa31LG1G17940 Aethionema arabicum HOM05D002009 ORTHO05D005728 4.6e-10 68.2 44 77.3
AL8G41220 Arabidopsis lyrata HOM05D002009 ORTHO05D005728 4.6e-10 68.2 49 69.4
arahy.Tifrunner.gnm1.ann1.SAM4NP Arachis hypogaea HOM05D002009 ORTHO05D031586 4.6e-10 68.2 49 69.4
Migut.H00864 Erythranthe guttata HOM05D002009 ORTHO05D005728 4.6e-10 68.2 46 76.1
Sp2g27020 Schrenkiella parvula HOM05D002009 ORTHO05D005728 4.6e-10 68.2 49 69.4
ECA233G2868 Erigeron canadensis HOM05D002009 ORTHO05D005728 6.0e-10 67.8 48 68.8
QL10p042354 Quercus lobata HOM05D002009 ORTHO05D005728 6.0e-10 67.8 49 69.4
vmacro12782 Vaccinium macrocarpon HOM05D002009 ORTHO05D005728 6.0e-10 67.8 50 74.0
CARHR277870 Cardamine hirsuta HOM05D002009 ORTHO05D005728 7.8e-10 67.4 49 67.3
Thhalv10003565m.g Eutrema salsugineum HOM05D002009 ORTHO05D005728 1.0e-09 67.0 49 67.3
AT5G63960 Arabidopsis thaliana HOM05D002009 ORTHO05D005728 1.3e-09 66.6 49 67.3
CDE06G1389 Ceratophyllum demersum HOM05D002009 ORTHO05D005728 1.3e-09 66.6 49 73.5
Carub.0008s2474 Capsella rubella HOM05D002009 ORTHO05D005728 1.7e-09 66.2 49 65.3
Lj1g0002975 Lotus japonicus HOM05D002009 ORTHO05D005728 1.7e-09 66.2 50 72.0
MD07G1029900 Malus domestica HOM05D002009 ORTHO05D005728 1.7e-09 66.2 47 72.3
Zm00001eb201340 Zea mays HOM05D002009 ORTHO05D005728 1.7e-09 66.2 49 71.4
PSO017G4864 Papaver somniferum HOM05D002009 ORTHO05D005728 3.9e-09 65.1 49 67.3
PSO170G4442 Papaver somniferum HOM05D002009 ORTHO05D005728 3.9e-09 65.1 49 67.3
HPP92_005659 Vanilla planifolia HOM05D002009 ORTHO05D005728 3.9e-09 65.1 47 70.2
Os11g0186400 Oryza sativa ssp. japonica HOM05D002009 ORTHO05D005728 8.7e-09 63.9 49 69.4
Aa31LG3G3040 Aethionema arabicum HOM05D002009 ORTHO05D005728 1.5e-08 63.2 49 65.3
ATR0584G016 Amborella trichopoda HOM05D002009 ORTHO05D005728 2.5e-08 62.4 49 67.3
MBI03_g39989_MAGBIO Magnolia biondii HOM05D002009 ORTHO05D005728 3.3e-08 62.0 49 67.3
Phvul.003G131200 Phaseolus vulgaris HOM05D003317 ORTHO05D003696 5.6e-08 61.2 52 65.4
VMungo1215G0865 Vigna mungo HOM05D003317 ORTHO05D003696 5.6e-08 61.2 52 67.3
SMO232G0005 Selaginella moellendorffii HOM05D002009 ORTHO05D005728 9.6e-08 60.5 49 61.2
Aqoxy5G02298 Aquilegia oxysepala HOM05D002009 ORTHO05D005728 1.6e-07 59.7 49 65.3
Phvul.007G245833 Phaseolus vulgaris HOM05D003317 ORTHO05D003696 4.8e-07 58.2 32 84.4
arahy.Tifrunner.gnm1.ann1.9F49MR Arachis hypogaea HOM05D002009 ORTHO05D004937 2.4e-06 55.8 39 66.7
Glyma.13G328300 Glycine max HOM05D007116 ORTHO05D008255 2.4e-06 55.8 39 74.4
Mapoly0087s0021 Marchantia polymorpha HOM05D002009 ORTHO05D005728 2.4e-06 55.8 49 63.3
Pp3c6_19160 Physcomitrium patens HOM05D002009 ORTHO05D005728 4.0e-06 55.1 45 66.7
Lalb_Chr23g0276391 Lupinus albus HOM05D003317 ORTHO05D003696 5.3e-06 54.7 50 62.0
Pp3c27_3350 Physcomitrium patens HOM05D002009 ORTHO05D005728 5.3e-06 54.7 45 64.4
CsaV3_6G041210 Cucumis sativus L. HOM05D002009 ORTHO05D005728 6.9e-06 54.3 77 45.5
Glyma.15G045500 Glycine max HOM05D007116 ORTHO05D008255 9.0e-06 53.9 39 71.8
Phvul.005G137100 Phaseolus vulgaris HOM05D007116 ORTHO05D008255 9.0e-06 53.9 39 71.8
Phvul.009G227500 Phaseolus vulgaris HOM05D003317 ORTHO05D003696 9.0e-06 53.9 72 47.2


User provided reference genes

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