Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G013300 Phaseolus vulgaris HOM05D000916 ORTHO05D009274 5.5e-95 350.9 169 100.0
VMungo1127G0561 Vigna mungo HOM05D000916 ORTHO05D009274 1.1e-84 316.6 169 90.5
Glyma.09G226100 Glycine max HOM05D000916 ORTHO05D009274 8.5e-72 273.9 176 80.1
Psat0s488g0040 Pisum sativum HOM05D000916 ORTHO05D009274 1.1e-71 273.5 169 78.7
Medtr0003s0480 Medicago truncatula HOM05D000916 ORTHO05D009274 2.6e-68 262.3 173 76.3
arahy.Tifrunner.gnm1.ann1.W0KZJE Arachis hypogaea HOM05D000916 ORTHO05D009274 9.1e-66 253.8 169 73.4
Lj3g0014758 Lotus japonicus HOM05D000916 ORTHO05D009274 1.0e-64 250.4 167 74.9
COL.COLO4_12325 Corchorus olitorius HOM05D000916 ORTHO05D003833 9.7e-52 207.2 166 65.1
RcHm_v2.0_Chr1g0318771 Rosa chinensis HOM05D000916 ORTHO05D009274 2.8e-51 205.7 176 62.5
FvH4_7g01930 Fragaria vesca HOM05D000916 ORTHO05D009274 1.6e-49 199.9 174 60.3
FAN06G1234 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.6e-49 199.9 174 60.3
Dinv07424 Davidia involucrata HOM05D000916 ORTHO05D009274 2.7e-49 199.1 175 60.0
FAN03G1280 Fragaria x ananassa HOM05D000916 ORTHO05D009274 4.5e-49 198.4 174 59.8
Manes.07G012200 Manihot esculenta HOM05D000916 ORTHO05D009274 4.5e-49 198.4 178 62.4
Prupe.2G025000 Prunus persica HOM05D000916 ORTHO05D009274 5.9e-49 198.0 172 62.2
Gohir.D08G065100 Gossypium hirsutum HOM05D000916 ORTHO05D009274 1.5e-47 193.4 171 58.5
Gorai.004G067400 Gossypium raimondii HOM05D000916 ORTHO05D009274 5.5e-47 191.4 173 58.4
TAR636G3509 Trochodendron aralioides HOM05D000916 ORTHO05D009274 2.7e-46 189.1 166 57.8
Migut.N01806 Erythranthe guttata HOM05D000916 ORTHO05D009274 8.8e-45 184.1 152 59.9
Lj9P642T24 Lonicera japonica HOM05D000916 ORTHO05D009274 1.2e-44 183.7 129 66.7
PGR031G2328 Punica granatum HOM05D000916 ORTHO05D009274 1.2e-44 183.7 177 52.5
Nn2g15166 Nelumbo nucifera HOM05D000916 ORTHO05D009274 1.5e-44 183.3 169 59.2
THA.LOC104826696 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 1.5e-44 183.3 173 57.8
THA.LOC104826705 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 1.5e-44 183.3 173 57.8
FAN03G2260 Fragaria x ananassa HOM05D000916 ORTHO05D009274 7.5e-44 181.0 156 60.9
Actinidia06285 Actinidia chinensis HOM05D000916 ORTHO05D009274 9.8e-44 180.6 133 68.4
Potri.001G259216 Populus trichocarpa HOM05D000916 ORTHO05D009274 1.3e-43 180.3 141 63.1
Potri.001G259900 Populus trichocarpa HOM05D000916 ORTHO05D009274 1.3e-43 180.3 141 63.1
TAR636G0367 Trochodendron aralioides HOM05D000916 ORTHO05D009274 1.7e-43 179.9 158 57.0
Cc04_g14680 Coffea canephora HOM05D000916 ORTHO05D009274 2.2e-43 179.5 129 65.9
TWI53G0499 Tripterygium wilfordii HOM05D000916 ORTHO05D009274 2.2e-43 179.5 175 57.1
Atru.chr11.2553 Acer truncatum HOM05D000916 ORTHO05D009274 6.3e-43 177.9 176 54.5
Rhsim07G0060200 Rhododendron simsii HOM05D000916 ORTHO05D009274 6.3e-43 177.9 125 67.2
THA.LOC104827433 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 6.3e-43 177.9 169 58.0
CsaV3_3G031830 Cucumis sativus L. HOM05D000916 ORTHO05D009274 1.1e-42 177.2 171 53.2
HanXRQChr15g0480451 Helianthus annuus HOM05D000916 ORTHO05D009274 1.1e-42 177.2 168 56.0
Sed0025824 Sechium edule HOM05D000916 ORTHO05D009274 1.4e-42 176.8 175 54.9
ClCG10G012070 Citrullus lanatus HOM05D000916 ORTHO05D009274 3.1e-42 175.6 171 53.8
MELO3C024009.2 Cucumis melo HOM05D000916 ORTHO05D009274 3.1e-42 175.6 170 54.7
Lsat_1_v5_gn_7_34400 Lactuca sativa HOM05D000916 ORTHO05D009274 3.1e-42 175.6 172 56.4
Eucgr.G03277 Eucalyptus grandis HOM05D000916 ORTHO05D009274 4.1e-42 175.3 188 51.1
CiPaw.14G004300 Carya illinoinensis HOM05D000916 ORTHO05D009274 5.4e-42 174.9 173 53.8
Aa31LG9G13290 Aethionema arabicum HOM05D000916 ORTHO05D009274 7.0e-42 174.5 171 55.0
Ciclev10032919m.g Citrus clementina HOM05D000916 ORTHO05D009274 7.0e-42 174.5 127 68.5
PSO170G4961 Papaver somniferum HOM05D000916 ORTHO05D009274 7.0e-42 174.5 162 57.4
AUR62023107 Chenopodium quinoa HOM05D000916 ORTHO05D009274 1.2e-41 173.7 167 55.7
Oeu049471.1 Olea europaea HOM05D000916 ORTHO05D009274 1.2e-41 173.7 177 54.2
Thhalv10003279m.g Eutrema salsugineum HOM05D000916 ORTHO05D009274 2.0e-41 172.9 172 55.2
Cpa.g.sc197.27 Carica papaya HOM05D000916 ORTHO05D009274 3.5e-41 172.2 173 56.6
DCAR_022368 Daucus carota HOM05D000916 ORTHO05D009274 3.5e-41 172.2 166 54.2
Potri.001G260600 Populus trichocarpa HOM05D000916 ORTHO05D009274 4.5e-41 171.8 123 68.3
MSTRG.5047 Avicennia marina HOM05D000916 ORTHO05D009274 7.7e-41 171.0 182 53.8
Sc11g0009010 Simmondsia chinensis HOM05D000916 ORTHO05D009274 7.7e-41 171.0 164 55.5
CSS0046245 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D009274 1.0e-40 170.6 176 54.0
Peaxi162Scf01108g00212 Petunia axillaris HOM05D000916 ORTHO05D009274 1.0e-40 170.6 165 54.5
Nitab4.5_0002888g0050 Nicotiana tabacum HOM05D000916 ORTHO05D009274 1.3e-40 170.2 144 59.0
GSVIVG01001443001 Vitis vinifera HOM05D000916 ORTHO05D009274 1.7e-40 169.9 167 58.1
Rhsim07G0060800 Rhododendron simsii HOM05D000916 ORTHO05D009274 2.3e-40 169.5 181 52.5
Sp2g08020 Schrenkiella parvula HOM05D000916 ORTHO05D009274 2.9e-40 169.1 181 53.6
Solyc01g088030.4 Solanum lycopersicum HOM05D000916 ORTHO05D009274 5.0e-40 168.3 141 60.3
A02p27690 Brassica napus HOM05D000916 ORTHO05D009274 6.6e-40 167.9 170 54.7
BraA02t07808Z Brassica rapa HOM05D000916 ORTHO05D009274 6.6e-40 167.9 170 54.7
Carub.0008s0547 Capsella rubella HOM05D000916 ORTHO05D009274 6.6e-40 167.9 175 52.6
BcaB07g30592 Brassica carinata HOM05D000916 ORTHO05D009274 1.5e-39 166.8 172 52.3
AT5G43210 Arabidopsis thaliana HOM05D000916 ORTHO05D009274 1.9e-39 166.4 173 53.2
Sopen01g034920 Solanum pennellii HOM05D000916 ORTHO05D009274 2.5e-39 166.0 141 59.6
Aqoxy2G00212 Aquilegia oxysepala HOM05D000916 ORTHO05D009274 3.3e-39 165.6 166 52.4
CAN.G410.4 Capsicum annuum HOM05D000916 ORTHO05D009274 7.2e-39 164.5 156 57.7
PSO210G2598 Papaver somniferum HOM05D000916 ORTHO05D009274 1.6e-38 163.3 163 55.2
SGA_v2.0_scaffold5G02941 Striga asiatica HOM05D000916 ORTHO05D009274 2.1e-38 162.9 131 60.3
MBI11_g21817_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D009274 4.7e-38 161.8 132 62.9
PGSC0003DMG400006832 Solanum tuberosum HOM05D000916 ORTHO05D009274 1.0e-37 160.6 145 57.2
EL10Ac2g04385 Beta vulgaris HOM05D000916 ORTHO05D009274 6.8e-37 157.9 163 53.4
vmacro13705 Vaccinium macrocarpon HOM05D000916 ORTHO05D009274 6.8e-37 157.9 183 48.1
ATR0782G182 Amborella trichopoda HOM05D000916 ORTHO05D009274 7.5e-36 154.5 167 52.1
TAR636G0653 Trochodendron aralioides HOM05D000916 ORTHO05D009274 9.8e-36 154.1 130 61.5
CANSAT80G0736 Cannabis sativa HOM05D000916 ORTHO05D009274 3.1e-34 149.1 150 56.7
CDE11G0804 Ceratophyllum demersum HOM05D000916 ORTHO05D009274 3.1e-34 149.1 121 57.9
Lalb_Chr03g0024151 Lupinus albus HOM05D000916 ORTHO05D009274 7.0e-34 147.9 101 72.3
Potri.001G260300 Populus trichocarpa HOM05D000916 ORTHO05D009274 9.2e-34 147.5 113 62.8
Hma1.2p1_0579F.1_g182540 Hydrangea macrophylla HOM05D000916 ORTHO05D009274 1.7e-32 143.3 84 77.4
Duzib133G0774 Durio zibethinus HOM05D000916 ORTHO05D009274 2.9e-32 142.5 166 49.4
Os11g0146550 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 3.9e-32 142.1 173 50.3
Cfa010832 Carpinus fangiana HOM05D000916 ORTHO05D009274 1.5e-31 140.2 103 67.0
MD02G1299300 Malus domestica HOM05D000916 ORTHO05D009274 3.3e-31 139.0 100 68.0
Zm00001eb405020 Zea mays HOM05D000916 ORTHO05D009274 4.0e-29 132.1 120 54.2
Gohir.A08G055800 Gossypium hirsutum HOM05D000916 ORTHO05D009274 6.8e-29 131.3 171 46.8
RcHm_v2.0_Chr1g0318641 Rosa chinensis HOM05D000916 ORTHO05D009274 8.9e-29 131.0 122 59.0
FAN01G3008 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.2e-28 130.6 111 62.2
AUR62009428 Chenopodium quinoa HOM05D000916 ORTHO05D009274 1.3e-27 127.1 102 59.8
Sabra16G0159300 Salix brachista HOM05D000916 ORTHO05D009274 1.4e-26 123.6 97 62.9
Ah.16g100710 Amaranthus hybridus HOM05D000916 ORTHO05D009274 1.3e-24 117.1 98 56.1
SEGI_20425 Sequoiadendron giganteum HOM05D000916 ORTHO05D009274 8.6e-24 114.4 163 46.6
Haze_03122 Corylus avellana HOM05D000916 ORTHO05D009274 3.3e-23 112.5 92 64.1
AL8G17370 Arabidopsis lyrata HOM05D000916 ORTHO05D009274 4.7e-22 108.6 98 60.2
Mapoly0059s0058 Marchantia polymorpha HOM05D000916 ORTHO05D009274 2.2e-19 99.8 124 43.5
Os12g0143300 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 6.0e-17 91.7 111 49.5
AagrBONN_evm.TU.Sc2ySwM_117.2289 Anthoceros agrestis HOM05D000916 ORTHO05D009274 6.6e-16 88.2 168 39.3
Atru.chr11.2549 Acer truncatum HOM05D000916 ORTHO05D009274 2.1e-14 83.2 52 71.2
AagrBONN_evm.TU.Sc2ySwM_117.2287 Anthoceros agrestis HOM05D000916 ORTHO05D009274 2.3e-13 79.7 83 47.0
RcHm_v2.0_Chr1g0318631 Rosa chinensis HOM05D000916 ORTHO05D009274 1.5e-12 77.0 62 61.3
Nitab4.5_0006695g0040 Nicotiana tabacum HOM05D000916 ORTHO05D009274 2.6e-12 76.3 147 35.4
EL10Ac7g15858 Beta vulgaris HOM05D002376 ORTHO05D004654 1.1e-07 60.8 100 38.0
Atru.chr1.2538 Acer truncatum HOM05D002376 ORTHO05D004654 1.5e-07 60.5 105 36.2
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 3.3e-07 59.3 76 39.5
unitig_747.g21450 Utricularia gibba HOM05D002376 ORTHO05D004654 4.3e-07 58.9 72 41.7
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 4.3e-07 58.9 64 46.9
Cfa023829 Carpinus fangiana HOM05D002376 ORTHO05D004654 5.6e-07 58.5 92 38.0
COL.COLO4_11190 Corchorus olitorius HOM05D002376 ORTHO05D004654 9.5e-07 57.8 80 38.8
Rhsim01G0242200 Rhododendron simsii HOM05D002376 ORTHO05D004654 9.5e-07 57.8 64 42.2
Zm00001eb303730 Zea mays HOM05D002376 ORTHO05D004654 9.5e-07 57.8 72 41.7
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 1.2e-06 57.4 64 43.8
PGR119G0696 Punica granatum HOM05D002376 ORTHO05D004654 1.2e-06 57.4 70 42.9
C04p59280 Brassica napus HOM05D002376 ORTHO05D004654 1.6e-06 57.0 64 42.2
BolC4t27433H Brassica oleracea HOM05D002376 ORTHO05D004654 1.6e-06 57.0 64 42.2
Cpa.g.sc2.324 Carica papaya HOM05D002376 ORTHO05D004654 1.6e-06 57.0 69 42.0
SMO364G0016 Selaginella moellendorffii HOM05D002376 ORTHO05D004654 1.6e-06 57.0 69 40.6
BcaB06g28361 Brassica carinata HOM05D002376 ORTHO05D004654 2.1e-06 56.6 64 42.2
BcaC02g08025 Brassica carinata HOM05D002376 ORTHO05D004654 2.1e-06 56.6 64 42.2
Thecc.09G361600 Theobroma cacao HOM05D002376 ORTHO05D004654 2.1e-06 56.6 80 38.8
Actinidia23178 Actinidia chinensis HOM05D002376 ORTHO05D004654 2.8e-06 56.2 95 31.6
A04p23110 Brassica napus HOM05D002376 ORTHO05D004654 2.8e-06 56.2 64 42.2
BraA04t17841Z Brassica rapa HOM05D002376 ORTHO05D004654 2.8e-06 56.2 64 42.2
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 2.8e-06 56.2 63 39.7
Lalb_Chr15g0085961 Lupinus albus HOM05D002376 ORTHO05D004654 2.8e-06 56.2 69 42.0
Sc12g0000140 Simmondsia chinensis HOM05D002376 ORTHO05D004654 2.8e-06 56.2 72 38.9
GSVIVG01024586001 Vitis vinifera HOM05D002376 ORTHO05D004654 2.8e-06 56.2 87 37.9
AL4G25210 Arabidopsis lyrata HOM05D002376 ORTHO05D004654 3.6e-06 55.8 64 42.2
AT2G30350 Arabidopsis thaliana HOM05D002376 ORTHO05D004654 3.6e-06 55.8 64 42.2
BcaC01g05989 Brassica carinata HOM05D002376 ORTHO05D004654 3.6e-06 55.8 64 42.2
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 3.6e-06 55.8 64 42.2
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 3.6e-06 55.8 64 42.2
CANSAT54G2949 Cannabis sativa HOM05D002376 ORTHO05D004654 3.6e-06 55.8 69 42.0
CARHR123670 Cardamine hirsuta HOM05D002376 ORTHO05D004654 3.6e-06 55.8 64 42.2
Haze_24447 Corylus avellana HOM05D002376 ORTHO05D004654 3.6e-06 55.8 70 42.9
Eucgr.J01841 Eucalyptus grandis HOM05D002376 ORTHO05D004654 3.6e-06 55.8 70 42.9
Gohir.1Z049629 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.6e-06 55.8 80 38.8
Gohir.A13G235800 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.6e-06 55.8 80 38.8
Gohir.D04G000035 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.6e-06 55.8 80 38.8
Gorai.012G000400 Gossypium raimondii HOM05D002376 ORTHO05D004654 3.6e-06 55.8 80 38.8
Lalb_Chr20g0117351 Lupinus albus HOM05D002376 ORTHO05D004654 3.6e-06 55.8 69 40.6
TAR369G0569 Trochodendron aralioides HOM05D002376 ORTHO05D004654 3.6e-06 55.8 78 39.7
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 4.7e-06 55.5 64 42.2
Thhalv10016841m.g Eutrema salsugineum HOM05D002376 ORTHO05D004654 4.7e-06 55.5 64 42.2
Sp4g12910 Schrenkiella parvula HOM05D002376 ORTHO05D004654 4.7e-06 55.5 64 42.2
Aa31LG5G6350 Aethionema arabicum HOM05D002376 ORTHO05D004654 6.2e-06 55.1 69 40.6
BcaB01g04112 Brassica carinata HOM05D002376 ORTHO05D004654 6.2e-06 55.1 101 32.7
CSS0048295 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 6.2e-06 55.1 64 42.2
CSS0050025 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 6.2e-06 55.1 64 42.2
Dinv28716 Davidia involucrata HOM05D002376 ORTHO05D004654 6.2e-06 55.1 78 38.5
Duzib168G1857 Durio zibethinus HOM05D002376 ORTHO05D004654 6.2e-06 55.1 118 33.1
Nn5g26899 Nelumbo nucifera HOM05D002376 ORTHO05D004654 6.2e-06 55.1 64 42.2
vmacro14632 Vaccinium macrocarpon HOM05D002376 ORTHO05D004654 6.2e-06 55.1 117 31.6
Carub.0004s1150 Capsella rubella HOM05D002376 ORTHO05D004654 8.1e-06 54.7 64 42.2
Cc01_g15150 Coffea canephora HOM05D002376 ORTHO05D004654 8.1e-06 54.7 78 38.5
Medtr3g466410 Medicago truncatula HOM05D002376 ORTHO05D004654 8.1e-06 54.7 69 42.0
QL01p025227 Quercus lobata HOM05D002376 ORTHO05D004654 8.1e-06 54.7 66 42.4
TPR.G24962 Trifolium pratense HOM05D002376 ORTHO05D004654 8.1e-06 54.7 69 42.0


User provided reference genes

Program Settings