Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 0.0e+00 1428.7 701 100.0
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 0.0e+00 1350.5 701 94.2
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 0.0e+00 1282.3 700 90.1
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 0.0e+00 1229.9 703 85.3
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 0.0e+00 1226.5 700 85.4
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 0.0e+00 1217.2 701 84.2
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 0.0e+00 1214.9 704 84.5
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 0.0e+00 1211.8 703 84.2
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 0.0e+00 1200.7 700 83.1
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 0.0e+00 1188.7 704 82.5
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1126.7 704 78.4
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1121.7 705 78.4
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 0.0e+00 1112.8 704 76.3
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 0.0e+00 1105.5 706 76.8
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1105.5 704 76.6
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 0.0e+00 1102.8 707 76.1
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1099.7 704 75.9
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 0.0e+00 1099.3 697 76.9
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 0.0e+00 1098.2 704 76.3
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1096.6 704 76.3
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 0.0e+00 1095.1 703 75.7
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 0.0e+00 1093.6 704 76.1
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1091.6 706 76.5
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 0.0e+00 1091.3 704 76.3
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1090.1 704 75.7
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 0.0e+00 1089.3 704 75.4
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1088.6 706 76.1
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1087.8 701 75.0
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 0.0e+00 1082.8 706 74.9
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1081.2 706 75.2
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1077.4 706 75.6
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1077.4 706 74.8
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1076.6 700 75.1
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 0.0e+00 1076.2 706 75.6
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 3.1e-309 1064.7 700 77.3
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 1.2e-308 1062.8 703 73.8
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 1.2e-308 1062.8 705 73.6
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 2.0e-308 1062.0 708 74.9
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 2.0e-308 1062.0 706 73.7
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 2.6e-308 1061.6 709 72.6
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 4.4e-308 1060.8 795 68.3
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 3.2e-306 1054.7 706 72.8
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 3.2e-306 1054.7 703 73.0
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 7.1e-306 1053.5 704 73.4
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 1.2e-305 1052.7 705 73.6
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 5.6e-303 1043.9 737 70.0
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 1.6e-302 1042.3 708 71.9
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 8.1e-302 1040.0 700 72.6
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 1.8e-301 1038.9 705 72.2
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 4.0e-301 1037.7 707 71.9
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 1.2e-300 1036.2 700 72.1
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 1.5e-300 1035.8 704 72.9
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 3.4e-300 1034.6 701 72.0
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 7.6e-300 1033.5 703 71.4
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 1.7e-299 1032.3 708 71.5
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 8.4e-299 1030.0 705 72.3
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 3.2e-298 1028.1 702 71.8
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 3.2e-298 1028.1 707 72.0
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 1.2e-297 1026.2 701 71.5
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 2.3e-296 1021.9 712 71.1
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 1.5e-295 1019.2 704 70.6
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 2.8e-294 1015.0 721 69.3
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 3.1e-293 1011.5 722 70.9
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 5.3e-293 1010.7 696 71.4
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 4.5e-292 1007.7 699 70.0
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 1.7e-291 1005.7 701 70.6
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 1.7e-291 1005.7 696 71.1
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 2.2e-291 1005.4 706 71.7
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 4.2e-290 1001.1 702 70.4
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 1.6e-289 999.2 706 71.0
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 3.5e-289 998.0 701 69.8
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 3.9e-288 994.6 697 69.9
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 1.1e-287 993.0 705 69.9
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 2.5e-287 991.9 703 69.4
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 7.4e-287 990.3 702 69.1
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 9.6e-287 989.9 701 69.5
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 1.6e-286 989.2 702 70.1
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 4.8e-286 987.6 728 67.4
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 1.2e-284 983.0 669 72.0
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 8.4e-283 976.9 681 69.9
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 1.2e-281 973.0 702 68.8
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 1.5e-279 966.1 704 69.2
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 2.5e-279 965.3 704 69.2
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 2.1e-273 945.7 777 61.8
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 4.6e-273 944.5 694 65.7
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 6.7e-272 940.6 700 66.6
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 1.2e-268 929.9 751 63.1
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 4.3e-263 911.4 708 65.0
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 7.4e-263 910.6 590 73.2
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 1.4e-258 896.3 706 64.0
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 3.2e-258 895.2 586 74.4
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 7.9e-257 890.6 670 65.5
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 3.7e-254 881.7 552 77.0
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 5.2e-248 861.3 713 62.6
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 3.1e-245 852.0 711 60.6
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 1.2e-239 833.6 707 60.8
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 1.7e-238 829.7 547 74.8
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 1.2e-228 797.0 523 75.0
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 1.9e-213 746.5 688 53.8
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 3.0e-211 739.2 693 54.5
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 2.4e-205 719.5 737 55.2
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 7.6e-191 671.4 694 49.6
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 2.4e-189 666.4 875 43.7
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 3.9e-179 632.5 449 68.8
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 2.4e-176 623.2 837 43.4
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 5.8e-167 592.0 688 48.4
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 2.7e-164 583.2 383 73.4
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 1.3e-155 554.3 488 56.6
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 1.7e-145 520.8 725 42.5
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 4.8e-145 519.2 753 41.7
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 2.2e-134 483.8 696 39.7
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 1.8e-131 474.2 735 39.2
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 2.0e-130 470.7 811 37.1
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 4.2e-117 426.4 334 67.7
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.2e-116 424.9 303 71.3
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 1.1e-112 411.8 361 59.3
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 5.6e-77 293.1 201 70.1
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 4.0e-75 287.0 282 53.9
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 8.4e-65 252.7 193 63.7
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 2.1e-60 238.0 132 87.9
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 2.4e-59 234.6 164 68.3
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 8.4e-41 172.9 102 82.4
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 1.0e-38 166.0 112 73.2
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 5.1e-38 163.7 110 79.1
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 5.5e-32 143.7 111 61.3
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 1.1e-29 136.0 100 71.0
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 3.4e-26 124.4 83 65.1
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 9.7e-21 106.3 70 72.9
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 3.7e-20 104.4 168 40.5
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 5.9e-18 97.1 81 56.8
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 3.6e-15 87.8 59 71.2
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 1.4e-14 85.9 61 68.9
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 5.9e-10 70.5 36 88.9
SHI28556 Sapria himalayana HOM05D005873 ORTHO05D007582 6.5e-09 67.0 51 58.8
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 4.2e-08 64.3 74 44.6


User provided reference genes

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