Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 8.1e-73 276.9 136 100.0
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 2.6e-71 271.9 136 97.8
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 2.6e-71 271.9 136 97.8
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 7.1e-69 263.8 136 94.9
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 9.2e-69 263.5 136 94.1
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 3.9e-67 258.1 136 91.9
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 3.9e-67 258.1 136 91.9
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 1.1e-66 256.5 136 91.2
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 5.6e-66 254.2 136 91.2
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 1.2e-65 253.1 136 89.7
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 1.4e-64 249.6 134 89.6
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 1.4e-64 249.6 132 90.9
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.2e-63 246.5 168 76.8
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 3.4e-63 245.0 168 76.2
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 3.8e-62 241.5 136 88.2
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 6.4e-62 240.7 136 87.5
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.9e-61 239.2 136 86.8
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.9e-61 239.2 136 86.8
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 2.4e-61 238.8 136 86.8
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 2.4e-61 238.8 136 86.8
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 3.2e-61 238.4 136 86.0
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 7.1e-61 237.3 136 86.0
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 7.1e-61 237.3 136 86.0
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 7.1e-61 237.3 136 86.0
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 9.2e-61 236.9 136 87.5
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.2e-60 236.5 136 85.3
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 1.2e-60 236.5 136 86.8
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.6e-60 236.1 136 86.0
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 1.6e-60 236.1 136 84.6
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 2.1e-60 235.7 136 85.3
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 3.5e-60 235.0 132 87.9
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 4.6e-60 234.6 136 86.0
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 4.6e-60 234.6 135 85.2
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 1.3e-59 233.0 136 85.3
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.3e-59 233.0 136 83.8
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 1.7e-59 232.6 136 83.1
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 1.7e-59 232.6 131 87.0
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 3.0e-59 231.9 136 84.6
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 3.0e-59 231.9 136 84.6
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 3.0e-59 231.9 136 84.6
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 3.9e-59 231.5 136 83.8
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 3.9e-59 231.5 133 85.7
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.9e-59 231.5 133 85.7
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.9e-59 231.5 133 85.7
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 3.9e-59 231.5 133 85.7
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 3.9e-59 231.5 136 83.1
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 5.1e-59 231.1 133 85.0
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 8.7e-59 230.3 136 82.4
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 8.7e-59 230.3 133 85.0
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 8.7e-59 230.3 136 85.3
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.1e-58 229.9 130 86.9
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.1e-58 229.9 130 86.9
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 1.1e-58 229.9 130 86.2
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.5e-58 229.6 131 85.5
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 2.5e-58 228.8 133 86.5
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 3.3e-58 228.4 136 81.6
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.3e-58 228.0 133 85.0
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 7.3e-58 227.3 129 86.8
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 1.2e-57 226.5 136 81.6
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 1.2e-57 226.5 136 81.6
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 1.2e-57 226.5 136 81.6
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 1.6e-57 226.1 129 86.0
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 1.6e-57 226.1 129 86.0
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 2.1e-57 225.7 129 86.0
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 2.8e-57 225.3 129 84.5
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 2.8e-57 225.3 136 80.9
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 3.6e-57 224.9 129 84.5
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 3.6e-57 224.9 136 82.4
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 3.6e-57 224.9 136 80.9
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 4.7e-57 224.6 130 84.6
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 6.2e-57 224.2 136 80.9
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 8.1e-57 223.8 136 81.6
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 8.1e-57 223.8 136 81.6
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 8.1e-57 223.8 129 85.3
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.8e-56 222.6 130 83.8
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.8e-56 222.6 136 82.4
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 1.8e-56 222.6 133 80.5
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 3.1e-56 221.9 130 83.1
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 3.1e-56 221.9 130 83.8
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 4.0e-56 221.5 136 81.6
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 4.0e-56 221.5 130 83.1
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 4.0e-56 221.5 131 83.2
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 4.0e-56 221.5 127 84.3
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 5.2e-56 221.1 133 82.7
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 5.2e-56 221.1 136 80.9
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 6.9e-56 220.7 136 80.1
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 6.9e-56 220.7 136 80.9
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 9.0e-56 220.3 134 81.3
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 1.2e-55 219.9 137 80.3
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 2.6e-55 218.8 136 80.1
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 3.4e-55 218.4 136 80.1
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.2e-54 215.7 156 71.8
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 2.2e-54 215.7 136 78.7
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 2.2e-54 215.7 138 79.0
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 6.4e-54 214.2 138 78.3
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 3.2e-53 211.8 128 80.5
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 3.5e-52 208.4 136 75.7
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 4.6e-52 208.0 136 75.7
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 6.6e-51 204.1 125 80.0
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.9e-50 202.6 136 72.8
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 2.5e-50 202.2 200 55.5
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.3e-49 199.9 136 70.6
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 6.2e-49 197.6 182 59.9
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 8.1e-49 197.2 136 69.9
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 5.3e-48 194.5 131 73.3
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 5.3e-48 194.5 137 75.9
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 1.7e-46 189.5 136 73.5
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.8e-46 188.3 133 74.4
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 2.7e-44 182.2 127 74.0
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 4.6e-44 181.4 134 62.7
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 2.3e-43 179.1 102 83.3
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 6.7e-43 177.6 130 63.1
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 7.4e-42 174.1 133 64.7
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 2.1e-41 172.6 144 66.7
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 4.8e-41 171.4 123 65.9
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 5.8e-39 164.5 134 59.7
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 5.8e-39 164.5 110 72.7
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 2.1e-36 156.0 87 87.4
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 4.6e-36 154.8 87 86.2
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 4.6e-36 154.8 87 86.2
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.0e-35 153.7 79 91.1
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 8.7e-35 150.6 134 62.7
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 3.7e-33 145.2 93 80.6
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.8e-33 144.8 90 71.1
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 1.4e-32 143.3 85 84.7
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 6.9e-32 141.0 85 81.2
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.2e-31 140.2 97 72.2
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.2e-31 140.2 90 70.0
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.5e-31 139.8 84 83.3
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 2.6e-31 139.0 85 81.2
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 6.5e-30 134.4 71 85.9
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 6.5e-30 134.4 85 81.2
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.9e-29 132.9 75 81.3
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.1e-28 129.4 92 70.7
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.9e-27 125.2 68 82.4
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.1e-27 124.8 90 71.1
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 6.7e-27 124.4 105 66.7
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.7e-26 121.3 85 74.1
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 2.5e-21 105.9 91 61.5
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 6.1e-20 101.3 64 75.0
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 3.0e-19 99.0 46 95.7
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 2.5e-18 95.9 83 60.2
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 2.8e-17 92.4 45 86.7
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 6.3e-17 91.3 91 54.9
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 6.7e-11 71.2 41 78.0
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 1.3e-09 67.0 56 66.1
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 5.3e-08 61.6 42 71.4
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.5e-07 60.1 57 57.9


User provided reference genes

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