Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G049100 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 1.3e-123 446.4 238 100.0
Phvul.009G080900 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 2.0e-119 432.6 239 97.5
VMungo0331G1538 Vigna mungo HOM05D004958 ORTHO05D005983 2.5e-114 415.6 238 91.6
Glyma.07G082900 Glycine max HOM05D004958 ORTHO05D005983 1.5e-103 379.8 240 85.0
Glyma.03G021100 Glycine max HOM05D004958 ORTHO05D005983 5.7e-98 361.3 262 77.1
Lalb_Chr07g0189581 Lupinus albus HOM05D004958 ORTHO05D005983 2.0e-95 352.8 234 79.5
Medtr5g058150 Medicago truncatula HOM05D004958 ORTHO05D005983 2.9e-94 349.0 236 78.0
Lj3g0000848 Lotus japonicus HOM05D004958 ORTHO05D005983 1.4e-91 340.1 210 82.4
Lalb_Chr12g0208371 Lupinus albus HOM05D004958 ORTHO05D005983 1.8e-91 339.7 234 77.4
Lalb_Chr12g0208451 Lupinus albus HOM05D004958 ORTHO05D005983 1.8e-91 339.7 234 77.4
Psat0s646g0120 Pisum sativum HOM05D004958 ORTHO05D005983 3.0e-91 339.0 210 82.4
Ca_05359_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 8.8e-91 337.4 236 77.5
Ca_24641_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 2.0e-90 336.3 236 76.3
arahy.Tifrunner.gnm1.ann1.BCQ50G Arachis hypogaea HOM05D004958 ORTHO05D005983 5.7e-90 334.7 212 83.5
GSVIVG01019856001 Vitis vinifera HOM05D004958 ORTHO05D005983 1.2e-87 327.0 223 76.2
TPR.G27805 Trifolium pratense HOM05D004958 ORTHO05D005983 5.0e-86 321.6 237 72.6
Medtr6g075250 Medicago truncatula HOM05D004958 ORTHO05D005983 1.8e-83 313.2 239 72.0
Duzib068G0251 Durio zibethinus HOM05D004958 ORTHO05D005983 3.7e-81 305.4 213 73.7
Manes.01G066700 Manihot esculenta HOM05D004958 ORTHO05D005983 2.4e-80 302.8 216 70.4
Potri.001G110000 Populus trichocarpa HOM05D004958 ORTHO05D005983 5.3e-80 301.6 221 70.1
Eucgr.D01919 Eucalyptus grandis HOM05D004958 ORTHO05D005983 9.1e-80 300.8 218 70.6
Nn6g34244 Nelumbo nucifera HOM05D004958 ORTHO05D005983 1.6e-79 300.1 235 67.2
RcHm_v2.0_Chr5g0045251 Rosa chinensis HOM05D004958 ORTHO05D005983 2.0e-79 299.7 213 71.4
CSS0008368 Camellia sinensis var. sinensis HOM05D004958 ORTHO05D005983 3.5e-79 298.9 227 67.8
ClCG08G000800 Citrullus lanatus HOM05D004958 ORTHO05D005983 4.5e-79 298.5 237 66.2
Hma1.2p1_0514F.1_g170070 Hydrangea macrophylla HOM05D004958 ORTHO05D005983 7.7e-79 297.7 220 70.5
PGR031G1609 Punica granatum HOM05D004958 ORTHO05D005983 5.0e-78 295.0 224 71.4
Gohir.D11G021000 Gossypium hirsutum HOM05D004958 ORTHO05D005983 6.5e-78 294.7 208 71.6
FvH4_7g07500 Fragaria vesca HOM05D004958 ORTHO05D005983 1.1e-77 293.9 231 67.1
Gorai.007G022300 Gossypium raimondii HOM05D004958 ORTHO05D005983 1.5e-77 293.5 208 71.2
MELO3C019927.2 Cucumis melo HOM05D004958 ORTHO05D005983 3.2e-77 292.4 237 65.4
FAN01G2068 Fragaria x ananassa HOM05D004958 ORTHO05D005983 4.2e-77 292.0 223 68.2
Gohir.A11G021300 Gossypium hirsutum HOM05D004958 ORTHO05D005983 4.2e-77 292.0 208 71.2
Sed0017231 Sechium edule HOM05D004958 ORTHO05D005983 4.2e-77 292.0 237 65.0
Thecc.03G271700 Theobroma cacao HOM05D004958 ORTHO05D005983 4.2e-77 292.0 244 65.2
Actinidia27408 Actinidia chinensis HOM05D004958 ORTHO05D005983 5.5e-77 291.6 222 70.7
FvH4_3g25070 Fragaria vesca HOM05D000097 ORTHO05D005983 5.5e-77 291.6 221 69.7
FAN06G2073 Fragaria x ananassa HOM05D004958 ORTHO05D005983 5.5e-77 291.6 231 66.7
FAN10G1939 Fragaria x ananassa HOM05D004958 ORTHO05D005983 5.5e-77 291.6 231 66.7
Ciclev10021851m.g Citrus clementina HOM05D004958 ORTHO05D005983 2.7e-76 289.3 208 69.2
DCAR_008420 Daucus carota HOM05D004958 ORTHO05D005983 6.1e-76 288.1 213 66.7
Lsat_1_v5_gn_6_87641 Lactuca sativa HOM05D004958 ORTHO05D005983 6.1e-76 288.1 218 67.4
Prupe.6G131000 Prunus persica HOM05D004958 ORTHO05D005983 8.0e-76 287.7 212 69.3
FAN03G3010 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.0e-75 287.3 231 66.2
Hund11528 Selenicereus undatus HOM05D004958 ORTHO05D005983 1.4e-75 287.0 223 69.5
Atru.chr12.1358 Acer truncatum HOM05D004958 ORTHO05D005983 1.8e-75 286.6 238 63.4
Migut.E01294 Erythranthe guttata HOM05D004958 ORTHO05D005983 2.0e-74 283.1 224 66.1
MD03G1146200 Malus domestica HOM05D004958 ORTHO05D005983 5.7e-74 281.6 237 65.0
SGA_v2.0_scaffold196G40881 Striga asiatica HOM05D004958 ORTHO05D005983 2.8e-73 279.3 217 65.9
MSTRG.1893 Avicennia marina HOM05D004958 ORTHO05D005983 4.8e-73 278.5 222 65.8
CsaV3_5G039810 Cucumis sativus L. HOM05D004958 ORTHO05D005983 4.8e-73 278.5 264 58.3
Nitab4.5_0002553g0040 Nicotiana tabacum HOM05D004958 ORTHO05D005983 6.3e-73 278.1 212 65.1
TWI81G1011 Tripterygium wilfordii HOM05D004958 ORTHO05D005983 6.3e-73 278.1 247 61.9
MBI11_g40802_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 8.3e-73 277.7 209 68.9
Nitab4.5_0001586g0220 Nicotiana tabacum HOM05D004958 ORTHO05D005983 2.4e-72 276.2 244 61.1
Nitab4.5_0003113g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 4.1e-72 275.4 223 63.7
CAN.G65.155 Capsicum annuum HOM05D004958 ORTHO05D005983 7.0e-72 274.6 222 64.0
Ah.12g057600 Amaranthus hybridus HOM05D004958 ORTHO05D005983 1.2e-71 273.9 237 62.0
ATR0757G162 Amborella trichopoda HOM05D004958 ORTHO05D005983 1.2e-71 273.9 217 66.4
PGSC0003DMG400026921 Solanum tuberosum HOM05D004958 ORTHO05D005983 1.6e-71 273.5 223 64.1
Nitab4.5_0003994g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 2.0e-71 273.1 231 61.5
Peaxi162Scf01294g00034 Petunia axillaris HOM05D004958 ORTHO05D005983 2.7e-71 272.7 221 63.8
Solyc06g073120.4 Solanum lycopersicum HOM05D004958 ORTHO05D005983 3.5e-71 272.3 221 64.3
Prupe.8G125000 Prunus persica HOM05D004958 ORTHO05D005983 4.5e-71 271.9 222 65.8
Sopen06g029470 Solanum pennellii HOM05D004958 ORTHO05D005983 4.5e-71 271.9 223 63.7
vmacro13919 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 1.1e-69 267.3 219 65.3
HPP92_003759 Vanilla planifolia HOM05D004958 ORTHO05D005983 2.8e-68 262.7 217 62.7
ECA240G3664 Erigeron canadensis HOM05D004958 ORTHO05D005983 1.8e-67 260.0 214 62.1
Aqoxy5G02043 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 4.0e-67 258.8 221 64.3
MBI11_g41127_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 4.0e-67 258.8 205 65.9
FAN11G1832 Fragaria x ananassa HOM05D000097 ORTHO05D005983 1.2e-66 257.3 224 63.4
MBI11_g31491_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 4.4e-66 255.4 229 61.6
EL10Ac5g12729 Beta vulgaris HOM05D004958 ORTHO05D005983 9.8e-66 254.2 219 64.4
COL.COLO4_09338 Corchorus olitorius HOM05D001926 ORTHO05D002121 9.8e-66 254.2 215 63.7
PSO782G2900 Papaver somniferum HOM05D004958 ORTHO05D005983 2.4e-64 249.6 214 62.6
THA.LOC104823571 Tarenaya hassleriana HOM05D004958 ORTHO05D005983 2.4e-64 249.6 211 61.1
PSO478G4928 Papaver somniferum HOM05D004958 ORTHO05D005983 3.1e-64 249.2 215 62.8
Os09g0525200 Oryza sativa ssp. japonica HOM05D004958 ORTHO05D005983 2.9e-62 242.7 213 58.2
SEGI_09748 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 3.8e-62 242.3 208 59.6
AL1G24110 Arabidopsis lyrata HOM05D004958 ORTHO05D005983 5.0e-62 241.9 208 61.5
Carub.0001s1234 Capsella rubella HOM05D004958 ORTHO05D005983 1.6e-60 236.9 230 56.1
AT1G12650 Arabidopsis thaliana HOM05D004958 ORTHO05D005983 1.0e-59 234.2 210 60.5
Sp1g11240 Schrenkiella parvula HOM05D004958 ORTHO05D005983 4.0e-59 232.3 205 59.5
vmacro12796 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 6.8e-59 231.5 280 51.4
CARHR012940 Cardamine hirsuta HOM05D004958 ORTHO05D005983 8.9e-59 231.1 205 57.1
Cc08_g14020 Coffea canephora HOM05D004958 ORTHO05D005983 1.5e-58 230.3 209 59.8
unitig_899.g14861 Utricularia gibba HOM05D004958 ORTHO05D005983 1.5e-58 230.3 246 54.1
Rhsim07G0094600 Rhododendron simsii HOM05D004958 ORTHO05D005983 2.0e-58 229.9 191 66.5
QL12p017317 Quercus lobata HOM05D004958 ORTHO05D005983 3.4e-58 229.2 286 47.2
Cfa012106 Carpinus fangiana HOM05D004958 ORTHO05D005983 9.8e-58 227.6 234 54.7
BolC8t52265H Brassica oleracea HOM05D004958 ORTHO05D005983 3.7e-57 225.7 180 63.9
Haze_20475 Corylus avellana HOM05D004958 ORTHO05D005983 3.7e-57 225.7 300 47.3
SalBow7G2511 Salvia bowleyana HOM05D004958 ORTHO05D005983 3.7e-57 225.7 194 61.3
BraA09t41722Z Brassica rapa HOM05D004958 ORTHO05D005983 8.3e-57 224.6 180 63.3
BcaB08g34261 Brassica carinata HOM05D004958 ORTHO05D005983 1.1e-56 224.2 183 62.8
MBI04_g02075_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.1e-56 224.2 213 59.6
Pp3c15_19260 Physcomitrium patens HOM05D004958 ORTHO05D005983 1.4e-56 223.8 211 55.5
A09p63740 Brassica napus HOM05D004958 ORTHO05D005983 1.9e-56 223.4 180 62.8
Zm00001eb103160 Zea mays HOM05D004958 ORTHO05D005983 1.9e-56 223.4 213 55.9
AUR62017291 Chenopodium quinoa HOM05D004958 ORTHO05D005983 1.6e-55 220.3 172 65.1
Mapoly0004s0034 Marchantia polymorpha HOM05D004958 ORTHO05D005983 6.0e-55 218.4 226 52.2
CiPaw.12G097900 Carya illinoinensis HOM05D004958 ORTHO05D005983 3.9e-54 215.7 250 50.8
MBI11_g47761_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 3.9e-54 215.7 171 65.5
C08p47240 Brassica napus HOM05D004958 ORTHO05D005983 6.6e-54 214.9 181 61.9
MBI11_g41124_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.1e-53 214.2 164 67.7
AagrBONN_evm.TU.Sc2ySwM_362.2285 Anthoceros agrestis HOM05D004958 ORTHO05D005983 3.3e-53 212.6 208 53.4
Phvul.009G247000 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 5.6e-53 211.8 238 59.2
MD11G1165500 Malus domestica HOM05D004958 ORTHO05D005983 7.3e-53 211.5 294 46.6
BcaC07g41688 Brassica carinata HOM05D004958 ORTHO05D005983 2.1e-52 209.9 172 62.8
Aa31LG1G2030 Aethionema arabicum HOM05D004958 ORTHO05D005983 8.0e-52 208.0 202 56.4
SMO228G0196 Selaginella moellendorffii HOM05D004958 ORTHO05D005983 8.0e-52 208.0 203 56.2
FAN21G2287 Fragaria x ananassa HOM05D000097 ORTHO05D000041 2.3e-51 206.5 170 64.7
Sabra01G0083200 Salix brachista HOM05D004958 ORTHO05D005983 6.8e-51 204.9 211 54.0
Thhalv10008688m.g Eutrema salsugineum HOM05D004958 ORTHO05D005983 3.7e-49 199.1 201 56.2
Sc22g0000230 Simmondsia chinensis HOM05D004958 ORTHO05D005983 3.2e-48 196.1 162 64.2
AUR62010651 Chenopodium quinoa HOM05D004958 ORTHO05D005983 7.0e-48 194.9 225 51.6
Atru.chr12.1359 Acer truncatum HOM05D004958 ORTHO05D005983 2.3e-46 189.9 238 47.5
Eucgr.L01965 Eucalyptus grandis HOM05D004958 ORTHO05D005983 1.1e-43 181.0 132 70.5
Dinv39007 Davidia involucrata HOM05D004958 ORTHO05D005983 1.3e-41 174.1 138 65.2
CDE02G4341 Ceratophyllum demersum HOM05D004958 ORTHO05D005983 1.4e-40 170.6 137 67.2
CBR_g12215 Chara braunii HOM05D004958 ORTHO05D005983 1.4e-32 144.1 167 46.1
MBI11_g32389_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 3.2e-32 142.9 225 43.6
Cre09.g401663 Chlamydomonas reinhardtii HOM05D004958 ORTHO05D005983 2.7e-31 139.8 230 39.1
Haze_08945 Corylus avellana HOM05D004958 ORTHO05D005983 1.1e-27 127.9 116 58.6
Zm00001eb297680 Zea mays HOM05D004958 ORTHO05D005983 6.9e-27 125.2 94 61.7
TAR636G1581 Trochodendron aralioides HOM05D004958 ORTHO05D005983 6.0e-23 112.1 83 69.9
PRCOL_00004135 Prasinoderma coloniale HOM05D004958 ORTHO05D005983 3.0e-22 109.8 190 34.7
FvH4_3g24970 Fragaria vesca HOM05D004958 ORTHO05D005983 8.7e-22 108.2 82 72.0
Aqoxy60s002 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 4.3e-21 105.9 126 50.8
SEGI_22925 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 5.6e-21 105.5 83 63.9
FAN11G3948 Fragaria x ananassa HOM05D004958 ORTHO05D005983 4.8e-20 102.4 214 37.9
MBI11_g12655_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.5e-18 97.4 143 44.1
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 4.5e-18 95.9 73 65.8
MBI11_g47763_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.6e-15 87.4 178 37.6
QL02p071798 Quercus lobata HOM05D004958 ORTHO05D005983 1.6e-15 87.4 185 37.3
Cpa.g.sc53.73 Carica papaya HOM05D004958 ORTHO05D005983 3.5e-15 86.3 49 81.6
Cfa023436 Carpinus fangiana HOM05D004958 ORTHO05D005983 2.5e-13 80.1 228 26.8
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 9.6e-13 78.2 59 62.7
Zm00001eb199630 Zea mays HOM05D004958 ORTHO05D005983 9.0e-11 71.6 56 60.7
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 4.5e-10 69.3 55 61.8
Aqoxy107s001 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 1.0e-09 68.2 76 57.9
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 2.2e-09 67.0 55 60.0
BcaB03g13174 Brassica carinata HOM05D004958 ORTHO05D005983 4.9e-09 65.9 59 62.7
Lj2g0009320 Lotus japonicus HOM05D004958 ORTHO05D236879 1.4e-08 64.3 70 51.4
Oeu011662.1 Olea europaea HOM05D004958 ORTHO05D005983 2.5e-08 63.5 90 50.0
Zm00001eb045710 Zea mays HOM05D004958 ORTHO05D005983 1.8e-06 57.4 37 70.3
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 2.3e-06 57.0 97 38.1
Zm00001eb118520 Zea mays HOM05D004958 ORTHO05D005983 3.0e-06 56.6 51 56.9


User provided reference genes

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