Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.2e-181 639.8 335 100.0
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 1.2e-170 603.2 334 94.9
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 1.9e-168 595.9 334 94.3
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 2.0e-165 585.9 329 92.7
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 3.8e-156 555.1 333 88.9
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 1.2e-154 550.1 325 88.9
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 2.7e-146 522.3 326 83.1
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 2.6e-141 505.8 326 81.3
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 1.0e-140 503.8 332 80.4
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 1.5e-136 490.0 332 78.6
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 4.1e-134 481.9 330 76.4
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 1.8e-129 466.5 313 76.7
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 1.1e-128 463.8 316 75.9
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 4.4e-128 461.8 329 74.8
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.7e-127 459.9 315 74.6
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 2.8e-127 459.1 330 75.5
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 4.1e-126 455.3 329 73.3
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 4.1e-126 455.3 335 72.5
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 5.3e-126 454.9 330 73.3
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 6.9e-126 454.5 325 74.5
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 1.5e-125 453.4 338 71.9
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.5e-125 453.4 337 71.5
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.0e-125 453.0 335 72.2
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.0e-125 453.0 319 74.6
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.9e-125 451.4 335 71.3
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.0e-124 450.7 323 73.1
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 1.7e-124 449.9 326 72.1
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.7e-124 449.9 304 75.7
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.2e-124 449.5 339 72.0
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.4e-123 446.8 318 75.5
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 3.2e-123 445.7 331 71.3
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 7.2e-123 444.5 322 71.7
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.6e-122 443.4 318 74.2
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.6e-122 443.4 322 71.7
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.1e-122 443.0 318 74.2
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.1e-122 443.0 318 74.2
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 2.1e-122 443.0 324 72.5
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 2.7e-122 442.6 329 71.4
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 6.1e-122 441.4 318 73.9
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 7.9e-122 441.0 333 70.9
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.0e-121 440.7 318 73.9
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 2.3e-121 439.5 315 73.0
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 3.9e-121 438.7 316 72.5
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 2.6e-120 436.0 324 71.0
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 7.4e-120 434.5 330 71.2
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 7.4e-120 434.5 323 70.9
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 7.4e-120 434.5 324 70.7
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 1.3e-119 433.7 298 77.9
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 1.7e-119 433.3 326 70.9
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 4.8e-119 431.8 322 70.8
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 4.8e-119 431.8 316 71.2
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 4.8e-119 431.8 324 70.4
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 2.4e-118 429.5 328 68.3
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 3.1e-118 429.1 311 71.4
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 3.1e-118 429.1 315 71.1
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 4.1e-118 428.7 344 67.7
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 2.6e-117 426.0 296 73.0
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 1.0e-116 424.1 331 68.3
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 6.5e-116 421.4 316 70.6
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 2.5e-115 419.5 309 69.9
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 9.4e-115 417.5 293 73.7
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 9.4e-115 417.5 319 69.0
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 1.2e-114 417.2 332 68.7
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 1.6e-114 416.8 312 69.9
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 1.6e-114 416.8 344 69.5
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 3.6e-114 415.6 293 73.0
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 4.7e-114 415.2 316 70.9
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 1.0e-113 414.1 325 68.0
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 4.0e-113 412.1 323 69.3
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 8.8e-113 411.0 290 71.0
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 1.5e-112 410.2 297 69.7
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 2.0e-112 409.8 344 65.1
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 2.6e-112 409.5 330 66.4
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 5.7e-112 408.3 326 68.4
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.7e-111 406.8 323 67.2
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 2.2e-111 406.4 347 64.6
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 4.8e-111 405.2 353 64.0
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 6.3e-111 404.8 328 67.1
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 6.3e-111 404.8 369 61.2
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 1.1e-110 404.1 335 66.3
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 1.1e-110 404.1 322 66.1
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 1.4e-110 403.7 287 71.1
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 1.4e-110 403.7 323 66.6
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 9.1e-110 401.0 333 63.7
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 9.1e-110 401.0 323 66.3
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 1.2e-109 400.6 317 66.9
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 2.0e-109 399.8 320 65.9
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 5.9e-109 398.3 336 64.3
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.0e-108 397.5 295 69.2
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 1.7e-108 396.7 323 65.9
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 2.2e-108 396.4 321 66.0
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 5.0e-108 395.2 320 65.6
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 1.5e-107 393.7 314 67.5
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 1.5e-107 393.7 320 65.6
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 2.5e-107 392.9 303 69.6
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 2.5e-107 392.9 393 58.0
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.2e-106 390.6 305 67.2
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 3.6e-106 389.0 317 65.3
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 6.1e-106 388.3 295 67.8
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 6.1e-106 388.3 319 64.9
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 2.3e-105 386.3 311 65.9
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 4.0e-105 385.6 317 65.3
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 5.2e-105 385.2 318 64.5
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 5.2e-105 385.2 318 64.5
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.2e-105 385.2 262 73.3
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 7.5e-104 381.3 315 64.4
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 9.8e-104 380.9 346 62.7
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 1.3e-103 380.6 318 63.5
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 1.3e-103 380.6 318 63.5
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.7e-103 380.2 314 66.6
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 1.7e-103 380.2 399 53.6
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 2.8e-103 379.4 313 64.5
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 4.8e-103 378.6 320 63.4
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 1.8e-102 376.7 313 63.6
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 2.4e-102 376.3 313 64.2
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 2.0e-101 373.2 313 63.6
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 2.7e-101 372.9 322 62.7
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 2.9e-100 369.4 314 63.4
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 8.6e-100 367.9 330 60.6
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 1.1e-99 367.5 331 58.9
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 2.5e-99 366.3 351 61.0
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 7.2e-99 364.8 316 62.0
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 1.2e-98 364.0 318 61.9
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.2e-97 358.6 390 55.6
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 1.2e-96 357.5 336 58.6
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.9e-91 340.1 330 59.7
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 5.6e-91 338.6 333 56.8
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 4.7e-90 335.5 320 59.1
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 2.1e-82 310.1 315 54.9
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 8.0e-82 308.1 298 57.0
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 3.7e-79 299.3 343 50.7
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-78 297.7 305 55.4
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 4.1e-78 295.8 318 54.4
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.6e-77 293.9 314 52.2
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 1.7e-76 290.4 309 55.0
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 2.0e-72 276.9 247 59.5
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 3.2e-70 269.6 314 52.2
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 3.0e-68 263.1 338 47.9
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 2.5e-67 260.0 265 55.5
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 2.8e-66 256.5 332 49.1
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 9.9e-64 248.1 215 64.2
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 2.1e-61 240.4 250 56.4
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.5e-61 239.6 186 68.3
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 7.8e-61 238.4 167 71.9
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 4.0e-57 226.1 231 56.7
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.0e-52 211.5 135 79.3
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 2.1e-50 203.8 159 63.5
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.8e-50 203.4 179 63.7
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 5.8e-48 195.7 170 63.5
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.4e-41 174.5 308 39.0
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.2e-38 163.3 161 60.9
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 6.0e-37 159.1 161 59.6
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 2.6e-32 143.7 114 68.4
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 4.9e-31 139.4 132 61.4
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 1.5e-27 127.9 298 35.2
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 5.7e-27 125.9 353 34.8
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 3.6e-21 106.7 79 62.0
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-19 101.7 99 57.6
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 5.7e-19 99.4 89 57.3
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 9.7e-19 98.6 84 57.1
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 9.1e-17 92.0 79 57.0
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 2.9e-15 87.0 79 67.1
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 1.9e-14 84.3 61 70.5
TAR626G1412 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.2e-10 70.9 104 46.2
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 8.2e-10 68.9 52 59.6
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 2.4e-09 67.4 38 86.8
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 5.3e-09 66.2 52 59.6
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 1.2e-08 65.1 43 69.8


User provided reference genes

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