Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 2477.2 1327 100.0
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 2293.8 1327 92.5
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 2146.7 1330 87.7
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 2103.2 1329 84.7
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1820.1 1359 73.0
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 1815.0 1344 75.0
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1807.3 1399 72.8
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1807.0 1336 74.9
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 1768.4 1337 71.7
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1756.9 1340 73.5
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 1728.0 1375 71.1
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 1656.3 1362 65.9
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1633.6 1276 71.1
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 1629.0 1352 65.8
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 1622.1 1353 65.8
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1618.2 1369 64.8
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1592.8 1360 63.9
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1587.4 1359 63.7
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1580.5 1361 64.4
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1577.8 1358 62.9
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1576.2 1360 63.5
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1574.3 1352 62.9
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1573.1 1352 62.9
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1566.2 1361 63.1
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1534.6 1351 61.7
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1532.7 1358 62.5
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1530.4 1361 61.8
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1528.1 1356 62.0
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1526.5 1356 61.4
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1521.9 1352 61.9
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1512.7 1347 61.8
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1497.6 1359 60.2
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1496.9 1366 60.1
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1490.7 1361 59.5
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1489.6 1388 60.0
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1487.2 1363 60.0
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1481.5 1349 59.9
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1480.3 1362 59.9
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1479.5 1343 61.0
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1479.5 1384 59.9
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1473.8 1344 59.7
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 1468.4 1351 59.0
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1464.1 1347 59.3
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1463.4 1351 58.9
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1454.9 1362 58.4
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1450.3 1347 59.0
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1433.7 1376 58.1
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1430.2 1359 57.3
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1421.0 1317 59.1
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1415.2 1367 57.2
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1414.1 1277 61.2
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1413.3 1357 58.1
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1411.0 1350 57.3
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1406.0 1355 58.2
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1406.0 1357 57.8
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1387.9 1361 58.0
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1385.2 1352 57.0
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1384.8 1356 57.3
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 1381.7 1196 61.5
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1381.7 1350 57.1
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1379.4 1355 56.2
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1377.8 1365 58.1
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1362.8 1357 56.6
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1361.7 1349 56.2
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1360.1 1351 57.0
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1359.4 1349 56.9
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1359.0 1348 56.5
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1358.2 1347 56.6
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1354.3 1346 56.0
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1351.7 1382 55.5
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1350.5 1353 55.9
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1349.3 1345 56.1
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 0.0e+00 1347.8 1366 55.4
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 1345.5 1360 56.3
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1344.7 1348 55.8
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1342.8 1362 55.9
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1339.7 1352 55.9
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1328.9 1347 55.8
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1328.5 1230 58.5
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1326.6 1349 55.2
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1325.1 1299 58.1
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1321.2 1352 54.9
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1313.1 1216 59.2
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1305.8 1239 58.4
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1301.2 1292 56.0
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1259.6 1255 56.3
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1257.7 1067 63.5
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 0.0e+00 1252.3 942 71.5
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 0.0e+00 1246.5 1361 52.5
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 0.0e+00 1230.3 1369 52.6
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 0.0e+00 1211.1 1059 60.9
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1205.7 1411 50.2
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1201.4 1187 56.4
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1192.9 1198 55.9
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 0.0e+00 1149.4 1355 50.7
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1129.8 1357 49.6
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1129.8 1055 59.0
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 0.0e+00 1124.0 1367 47.5
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 0.0e+00 1093.2 976 59.2
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 3.4e-309 1065.4 1188 51.7
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 3.6e-303 1045.4 1342 46.3
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 1.9e-296 1023.1 1324 47.5
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 7.6e-293 1011.1 1326 47.1
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 1.9e-283 979.9 1060 56.6
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 7.7e-261 904.8 949 53.3
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.2e-259 899.4 756 62.7
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.0e-252 877.9 1171 47.1
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 1.1e-251 874.4 1019 48.9
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 5.0e-244 849.0 717 61.9
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 4.0e-241 839.3 830 56.4
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 1.4e-230 804.3 1409 38.8
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 5.4e-230 802.4 758 57.4
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 8.3e-223 778.5 1120 43.8
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.9e-211 740.7 834 51.3
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 5.6e-211 739.2 1446 37.1
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.2e-183 647.5 505 69.7
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 6.0e-181 639.4 406 86.2
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 6.9e-169 599.4 1094 36.3
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.0e-167 595.5 459 70.8
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 5.7e-147 526.6 642 48.1
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 8.0e-141 506.1 1515 28.8
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 3.7e-138 497.3 414 68.1
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 3.2e-113 414.5 346 68.5
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 4.6e-104 384.0 341 63.0
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.6e-101 375.6 327 59.0
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 3.1e-84 318.2 369 52.8
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 8.4e-82 310.1 279 66.3
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 7.8e-80 303.5 433 43.9
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 2.3e-79 302.0 1428 25.1
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 4.6e-64 251.1 908 27.6
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 1.5e-54 219.5 610 34.4
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 1.0e-47 196.8 234 51.3
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 3.9e-39 168.3 114 71.9
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 7.0e-36 157.5 106 75.5
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 1.5e-35 156.4 231 41.6
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 4.4e-30 138.3 82 85.4
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 7.4e-30 137.5 155 47.7
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 2.4e-28 132.5 114 59.6
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 3.8e-26 125.2 113 61.1
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.1e-24 119.4 195 41.5
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 3.4e-22 112.1 87 62.1
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 1.6e-16 93.2 80 63.8
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.4e-15 90.1 81 55.6
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.4e-15 90.1 81 55.6
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 9.8e-14 84.0 71 57.7
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 6.6e-10 71.2 48 75.0
Medtr4g120490 Medicago truncatula HOM05D001406 ORTHO05D265975 8.6e-10 70.9 96 52.1
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 7.2e-09 67.8 89 44.9
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 4.0e-07 62.0 59 59.3
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 5.2e-07 61.6 161 28.0
Medtr6g046230 Medicago truncatula HOM05D000076 ORTHO05D264292 8.9e-07 60.8 79 53.2
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 1.5e-06 60.1 193 28.5
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 2.0e-06 59.7 49 57.1
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 3.4e-06 58.9 161 26.7
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 7.5e-06 57.8 135 27.4
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 7.5e-06 57.8 161 26.1
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 7.5e-06 57.8 163 27.6
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 9.8e-06 57.4 135 27.4


User provided reference genes

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