Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G080900 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 2.7e-124 448.7 239 100.0
Phvul.010G049100 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 9.1e-120 433.7 239 97.5
VMungo0331G1538 Vigna mungo HOM05D004958 ORTHO05D005983 3.1e-112 408.7 239 90.8
Glyma.07G082900 Glycine max HOM05D004958 ORTHO05D005983 7.7e-103 377.5 240 84.6
Glyma.03G021100 Glycine max HOM05D004958 ORTHO05D005983 1.5e-98 363.2 262 76.7
Medtr5g058150 Medicago truncatula HOM05D004958 ORTHO05D005983 1.7e-94 349.7 236 78.4
Lalb_Chr07g0189581 Lupinus albus HOM05D004958 ORTHO05D005983 3.8e-94 348.6 235 79.1
Lalb_Chr12g0208371 Lupinus albus HOM05D004958 ORTHO05D005983 5.5e-93 344.7 210 83.8
Lalb_Chr12g0208451 Lupinus albus HOM05D004958 ORTHO05D005983 5.5e-93 344.7 210 83.8
Ca_24641_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 1.2e-90 337.0 236 76.3
Ca_05359_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 2.6e-90 335.9 236 77.1
Psat0s646g0120 Pisum sativum HOM05D004958 ORTHO05D005983 4.4e-90 335.1 233 76.8
arahy.Tifrunner.gnm1.ann1.BCQ50G Arachis hypogaea HOM05D004958 ORTHO05D005983 2.2e-89 332.8 212 83.5
Lj3g0000848 Lotus japonicus HOM05D004958 ORTHO05D005983 6.3e-89 331.3 235 74.0
TPR.G27805 Trifolium pratense HOM05D004958 ORTHO05D005983 4.5e-87 325.1 237 72.6
GSVIVG01019856001 Vitis vinifera HOM05D004958 ORTHO05D005983 5.0e-86 321.6 224 75.9
Medtr6g075250 Medicago truncatula HOM05D004958 ORTHO05D005983 6.1e-84 314.7 239 71.5
Duzib068G0251 Durio zibethinus HOM05D004958 ORTHO05D005983 1.1e-80 303.9 213 73.2
Manes.01G066700 Manihot esculenta HOM05D004958 ORTHO05D005983 5.4e-80 301.6 216 70.4
Nn6g34244 Nelumbo nucifera HOM05D004958 ORTHO05D005983 1.6e-79 300.1 213 70.9
CSS0008368 Camellia sinensis var. sinensis HOM05D004958 ORTHO05D005983 4.5e-79 298.5 223 70.4
RcHm_v2.0_Chr5g0045251 Rosa chinensis HOM05D004958 ORTHO05D005983 4.5e-79 298.5 213 71.8
Eucgr.D01919 Eucalyptus grandis HOM05D004958 ORTHO05D005983 1.0e-78 297.4 235 68.1
Potri.001G110000 Populus trichocarpa HOM05D004958 ORTHO05D005983 1.0e-78 297.4 228 69.3
Hma1.2p1_0514F.1_g170070 Hydrangea macrophylla HOM05D004958 ORTHO05D005983 2.3e-78 296.2 221 70.6
PGR031G1609 Punica granatum HOM05D004958 ORTHO05D005983 6.6e-78 294.7 224 71.0
ClCG08G000800 Citrullus lanatus HOM05D004958 ORTHO05D005983 1.1e-77 293.9 238 66.4
Gohir.D11G021000 Gossypium hirsutum HOM05D004958 ORTHO05D005983 1.1e-77 293.9 208 71.6
Gorai.007G022300 Gossypium raimondii HOM05D004958 ORTHO05D005983 2.5e-77 292.7 208 71.2
Sed0017231 Sechium edule HOM05D004958 ORTHO05D005983 3.3e-77 292.4 233 65.7
Gohir.A11G021300 Gossypium hirsutum HOM05D004958 ORTHO05D005983 7.3e-77 291.2 208 71.2
FvH4_7g07500 Fragaria vesca HOM05D004958 ORTHO05D005983 1.6e-76 290.0 226 67.3
FvH4_3g25070 Fragaria vesca HOM05D000097 ORTHO05D005983 3.6e-76 288.9 219 69.9
Ciclev10021851m.g Citrus clementina HOM05D004958 ORTHO05D005983 6.1e-76 288.1 208 69.2
MELO3C019927.2 Cucumis melo HOM05D004958 ORTHO05D005983 6.1e-76 288.1 238 64.7
Thecc.03G271700 Theobroma cacao HOM05D004958 ORTHO05D005983 6.1e-76 288.1 244 64.8
FAN06G2073 Fragaria x ananassa HOM05D004958 ORTHO05D005983 8.0e-76 287.7 226 66.8
FAN10G1939 Fragaria x ananassa HOM05D004958 ORTHO05D005983 8.0e-76 287.7 226 66.8
Prupe.6G131000 Prunus persica HOM05D004958 ORTHO05D005983 8.0e-76 287.7 212 69.8
DCAR_008420 Daucus carota HOM05D004958 ORTHO05D005983 1.8e-75 286.6 213 66.7
Lsat_1_v5_gn_6_87641 Lactuca sativa HOM05D004958 ORTHO05D005983 1.8e-75 286.6 219 67.6
Actinidia27408 Actinidia chinensis HOM05D004958 ORTHO05D005983 2.3e-75 286.2 238 67.2
FAN01G2068 Fragaria x ananassa HOM05D004958 ORTHO05D005983 4.0e-75 285.4 226 67.3
Hund11528 Selenicereus undatus HOM05D004958 ORTHO05D005983 5.2e-75 285.0 224 69.6
Atru.chr12.1358 Acer truncatum HOM05D004958 ORTHO05D005983 6.8e-75 284.6 238 62.6
FAN03G3010 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.5e-74 283.5 226 66.4
Migut.E01294 Erythranthe guttata HOM05D004958 ORTHO05D005983 7.5e-74 281.2 235 63.0
Nitab4.5_0001586g0220 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.7e-73 280.0 212 66.5
SGA_v2.0_scaffold196G40881 Striga asiatica HOM05D004958 ORTHO05D005983 2.9e-73 279.3 217 65.4
MD03G1146200 Malus domestica HOM05D004958 ORTHO05D005983 4.9e-73 278.5 223 68.6
TWI81G1011 Tripterygium wilfordii HOM05D004958 ORTHO05D005983 4.9e-73 278.5 256 60.9
Nitab4.5_0002553g0040 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.4e-72 276.9 212 65.1
Nitab4.5_0003113g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.4e-72 276.9 223 63.2
MSTRG.1893 Avicennia marina HOM05D004958 ORTHO05D005983 1.8e-72 276.6 218 67.4
MBI11_g40802_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.8e-72 276.6 209 68.4
CsaV3_5G039810 Cucumis sativus L. HOM05D004958 ORTHO05D005983 5.4e-72 275.0 264 58.7
Nitab4.5_0003994g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.2e-71 273.9 223 63.2
PGSC0003DMG400026921 Solanum tuberosum HOM05D004958 ORTHO05D005983 1.2e-71 273.9 223 63.2
Peaxi162Scf01294g00034 Petunia axillaris HOM05D004958 ORTHO05D005983 2.0e-71 273.1 221 63.3
Solyc06g073120.4 Solanum lycopersicum HOM05D004958 ORTHO05D005983 2.7e-71 272.7 221 63.3
Sopen06g029470 Solanum pennellii HOM05D004958 ORTHO05D005983 3.5e-71 272.3 223 62.8
ATR0757G162 Amborella trichopoda HOM05D004958 ORTHO05D005983 7.8e-71 271.2 224 66.5
Prupe.8G125000 Prunus persica HOM05D004958 ORTHO05D005983 1.0e-70 270.8 222 65.8
Ah.12g057600 Amaranthus hybridus HOM05D004958 ORTHO05D005983 2.3e-70 269.6 224 64.3
CAN.G65.155 Capsicum annuum HOM05D004958 ORTHO05D005983 3.0e-70 269.2 223 63.2
vmacro13919 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 5.6e-69 265.0 224 63.8
HPP92_003759 Vanilla planifolia HOM05D004958 ORTHO05D005983 1.6e-68 263.5 218 62.4
Aqoxy5G02043 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 4.0e-67 258.8 222 64.0
ECA240G3664 Erigeron canadensis HOM05D004958 ORTHO05D005983 8.9e-67 257.7 222 59.5
MBI11_g41127_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.2e-66 257.3 205 65.4
FAN11G1832 Fragaria x ananassa HOM05D000097 ORTHO05D005983 3.4e-66 255.8 237 60.8
MBI11_g31491_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 9.8e-66 254.2 229 61.1
EL10Ac5g12729 Beta vulgaris HOM05D004958 ORTHO05D005983 1.7e-65 253.4 219 63.9
COL.COLO4_09338 Corchorus olitorius HOM05D001926 ORTHO05D002121 2.2e-65 253.1 215 63.7
PSO782G2900 Papaver somniferum HOM05D004958 ORTHO05D005983 5.4e-64 248.4 212 62.3
THA.LOC104823571 Tarenaya hassleriana HOM05D004958 ORTHO05D005983 5.4e-64 248.4 211 61.1
PSO478G4928 Papaver somniferum HOM05D004958 ORTHO05D005983 3.5e-63 245.7 216 61.6
Os09g0525200 Oryza sativa ssp. japonica HOM05D004958 ORTHO05D005983 3.9e-62 242.3 213 58.7
AL1G24110 Arabidopsis lyrata HOM05D004958 ORTHO05D005983 1.1e-61 240.7 208 61.5
SEGI_09748 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 1.5e-61 240.4 208 58.7
AT1G12650 Arabidopsis thaliana HOM05D004958 ORTHO05D005983 2.3e-59 233.0 210 60.5
Carub.0001s1234 Capsella rubella HOM05D004958 ORTHO05D005983 2.3e-59 233.0 229 55.9
Sp1g11240 Schrenkiella parvula HOM05D004958 ORTHO05D005983 1.2e-58 230.7 205 59.5
CARHR012940 Cardamine hirsuta HOM05D004958 ORTHO05D005983 2.6e-58 229.6 205 57.1
Cc08_g14020 Coffea canephora HOM05D004958 ORTHO05D005983 3.4e-58 229.2 209 59.8
Rhsim07G0094600 Rhododendron simsii HOM05D004958 ORTHO05D005983 4.4e-58 228.8 192 66.1
vmacro12796 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 4.4e-58 228.8 301 48.5
unitig_899.g14861 Utricularia gibba HOM05D004958 ORTHO05D005983 5.8e-58 228.4 250 54.4
Haze_20475 Corylus avellana HOM05D004958 ORTHO05D005983 7.5e-58 228.0 312 46.5
QL12p017317 Quercus lobata HOM05D004958 ORTHO05D005983 7.5e-58 228.0 286 47.2
Cfa012106 Carpinus fangiana HOM05D004958 ORTHO05D005983 2.9e-57 226.1 248 51.6
BolC8t52265H Brassica oleracea HOM05D004958 ORTHO05D005983 1.1e-56 224.2 180 63.9
BcaB08g34261 Brassica carinata HOM05D004958 ORTHO05D005983 2.4e-56 223.0 183 62.8
BraA09t41722Z Brassica rapa HOM05D004958 ORTHO05D005983 2.4e-56 223.0 180 63.3
MBI04_g02075_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 2.4e-56 223.0 213 59.2
Pp3c15_19260 Physcomitrium patens HOM05D004958 ORTHO05D005983 2.4e-56 223.0 211 55.9
Zm00001eb103160 Zea mays HOM05D004958 ORTHO05D005983 2.4e-56 223.0 213 55.9
SalBow7G2511 Salvia bowleyana HOM05D004958 ORTHO05D005983 3.2e-56 222.6 210 58.6
A09p63740 Brassica napus HOM05D004958 ORTHO05D005983 5.4e-56 221.9 180 62.8
AUR62017291 Chenopodium quinoa HOM05D004958 ORTHO05D005983 2.1e-55 219.9 172 65.7
Mapoly0004s0034 Marchantia polymorpha HOM05D004958 ORTHO05D005983 5.1e-54 215.3 233 50.6
C08p47240 Brassica napus HOM05D004958 ORTHO05D005983 6.6e-54 214.9 181 62.4
MBI11_g47761_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.1e-53 214.2 171 64.9
CiPaw.12G097900 Carya illinoinensis HOM05D004958 ORTHO05D005983 1.9e-53 213.4 250 50.4
MBI11_g41124_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 3.3e-53 212.6 164 67.1
AagrBONN_evm.TU.Sc2ySwM_362.2285 Anthoceros agrestis HOM05D004958 ORTHO05D005983 1.6e-52 210.3 208 52.9
MD11G1165500 Malus domestica HOM05D004958 ORTHO05D005983 1.6e-52 210.3 303 45.9
BcaC07g41688 Brassica carinata HOM05D004958 ORTHO05D005983 6.2e-52 208.4 172 62.8
Phvul.009G247000 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 1.4e-51 207.2 239 58.2
Aa31LG1G2030 Aethionema arabicum HOM05D004958 ORTHO05D005983 3.1e-51 206.1 202 55.4
SMO228G0196 Selaginella moellendorffii HOM05D004958 ORTHO05D005983 4.0e-51 205.7 203 55.2
FAN21G2287 Fragaria x ananassa HOM05D000097 ORTHO05D000041 6.8e-51 204.9 170 64.7
Sabra01G0083200 Salix brachista HOM05D004958 ORTHO05D005983 7.6e-50 201.4 218 53.7
AUR62010651 Chenopodium quinoa HOM05D004958 ORTHO05D005983 2.4e-48 196.4 218 52.8
Sc22g0000230 Simmondsia chinensis HOM05D004958 ORTHO05D005983 4.1e-48 195.7 162 63.6
Thhalv10008688m.g Eutrema salsugineum HOM05D004958 ORTHO05D005983 7.1e-48 194.9 203 53.7
Atru.chr12.1359 Acer truncatum HOM05D004958 ORTHO05D005983 3.0e-46 189.5 238 47.1
Eucgr.L01965 Eucalyptus grandis HOM05D004958 ORTHO05D005983 4.0e-43 179.1 149 67.1
Dinv39007 Davidia involucrata HOM05D004958 ORTHO05D005983 5.8e-42 175.3 134 69.4
CDE02G4341 Ceratophyllum demersum HOM05D004958 ORTHO05D005983 2.1e-39 166.8 138 66.7
CBR_g12215 Chara braunii HOM05D004958 ORTHO05D005983 2.4e-32 143.3 167 45.5
MBI11_g32389_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.2e-31 141.0 236 42.4
Cre09.g401663 Chlamydomonas reinhardtii HOM05D004958 ORTHO05D005983 2.7e-31 139.8 226 41.2
Haze_08945 Corylus avellana HOM05D004958 ORTHO05D005983 1.4e-27 127.5 115 58.3
Zm00001eb297680 Zea mays HOM05D004958 ORTHO05D005983 9.0e-27 124.8 94 61.7
TAR636G1581 Trochodendron aralioides HOM05D004958 ORTHO05D005983 7.9e-23 111.7 83 68.7
FvH4_3g24970 Fragaria vesca HOM05D004958 ORTHO05D005983 6.7e-22 108.6 82 73.2
PRCOL_00004135 Prasinoderma coloniale HOM05D004958 ORTHO05D005983 1.1e-21 107.8 190 34.7
Aqoxy60s002 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 1.3e-20 104.4 126 50.0
SEGI_22925 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 1.6e-20 104.0 83 62.7
FAN11G3948 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.1e-19 101.3 214 37.9
MBI11_g12655_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 3.4e-18 96.3 143 43.4
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 5.8e-18 95.5 73 65.8
QL02p071798 Quercus lobata HOM05D004958 ORTHO05D005983 5.5e-16 89.0 161 40.4
Cfa023436 Carpinus fangiana HOM05D004958 ORTHO05D005983 6.0e-15 85.5 180 29.4
MBI11_g47763_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 7.9e-15 85.1 178 37.1
Cpa.g.sc53.73 Carica papaya HOM05D004958 ORTHO05D005983 1.0e-14 84.7 49 79.6
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 7.4e-13 78.6 59 62.7
Zm00001eb199630 Zea mays HOM05D004958 ORTHO05D005983 9.0e-11 71.6 56 60.7
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 5.9e-10 68.9 55 61.8
Aqoxy107s001 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 7.7e-10 68.6 86 54.7
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 2.9e-09 66.6 55 60.0
Lj2g0009320 Lotus japonicus HOM05D004958 ORTHO05D236879 5.0e-09 65.9 70 52.9
Oeu011662.1 Olea europaea HOM05D004958 ORTHO05D005983 6.5e-09 65.5 84 50.0
BcaB03g13174 Brassica carinata HOM05D004958 ORTHO05D005983 1.4e-08 64.3 59 61.0
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 1.8e-06 57.4 97 40.2
Zm00001eb045710 Zea mays HOM05D004958 ORTHO05D005983 2.3e-06 57.0 35 74.3
Zm00001eb118520 Zea mays HOM05D004958 ORTHO05D005983 8.8e-06 55.1 51 56.9


User provided reference genes

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