Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 9.8e-164 580.1 298 100.0
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 4.3e-143 511.5 298 90.6
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 6.4e-139 497.7 298 87.9
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 4.1e-138 495.0 298 87.6
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 3.1e-117 425.6 295 79.0
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 3.4e-116 422.2 295 78.6
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 2.5e-111 406.0 307 73.6
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 1.2e-108 397.1 275 79.3
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 7.6e-108 394.4 294 74.1
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 9.9e-108 394.0 317 72.2
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 5.1e-104 381.7 242 81.4
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 2.1e-102 376.3 297 72.1
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 6.2e-102 374.8 290 70.7
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 8.1e-102 374.4 318 66.0
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 1.1e-101 374.0 263 74.1
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 1.2e-100 370.5 233 79.4
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 2.0e-100 369.8 268 73.5
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.0e-100 369.8 236 80.1
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 2.6e-100 369.4 301 69.8
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 2.2e-99 366.3 306 67.3
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 4.9e-99 365.2 252 74.6
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 2.4e-98 362.8 304 66.4
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 2.4e-98 362.8 245 74.7
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 3.2e-98 362.5 241 75.5
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 4.2e-98 362.1 275 70.2
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 7.1e-98 361.3 313 65.5
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 9.3e-98 360.9 281 68.7
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 9.3e-98 360.9 250 75.6
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 1.2e-97 360.5 296 67.6
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 2.1e-97 359.8 311 65.0
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 2.7e-97 359.4 290 67.2
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 6.7e-96 354.8 275 69.1
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 1.9e-95 353.2 292 65.8
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 1.9e-95 353.2 314 64.3
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 1.9e-95 353.2 305 64.9
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 2.5e-95 352.8 315 65.4
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 2.5e-95 352.8 232 75.9
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 3.3e-95 352.4 235 76.6
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 3.3e-95 352.4 243 74.5
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 5.6e-95 351.7 304 65.5
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 5.6e-95 351.7 315 65.1
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 1.3e-94 350.5 270 69.3
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 1.3e-94 350.5 275 68.4
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 2.1e-94 349.7 270 68.5
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 2.1e-94 349.7 316 63.6
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 2.1e-94 349.7 316 62.7
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 3.7e-94 349.0 307 64.2
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 3.7e-94 349.0 314 64.6
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 6.2e-94 348.2 243 73.7
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 8.1e-94 347.8 244 73.0
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 1.8e-93 346.7 245 72.2
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 3.1e-93 345.9 243 72.4
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 3.1e-93 345.9 307 62.2
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 5.3e-93 345.1 307 62.2
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 9.0e-93 344.4 242 74.0
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 1.2e-92 344.0 255 70.6
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 7.6e-92 341.3 311 63.0
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 7.6e-92 341.3 302 62.9
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 1.3e-91 340.5 296 62.5
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.2e-91 339.7 278 64.7
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.2e-91 339.7 278 64.7
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.9e-91 339.3 271 65.3
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 1.1e-90 337.4 280 64.3
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 3.2e-90 335.9 223 74.0
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 1.2e-89 334.0 293 64.2
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.2e-89 334.0 258 69.4
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 1.2e-89 334.0 306 64.4
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 1.6e-89 333.6 237 72.2
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 1.6e-89 333.6 270 64.8
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 2.7e-89 332.8 241 71.0
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 2.7e-89 332.8 314 63.4
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 3.5e-89 332.4 244 71.3
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 4.6e-89 332.0 231 71.9
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 6.0e-89 331.6 306 63.7
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 6.0e-89 331.6 223 73.5
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.0e-88 330.9 280 65.7
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 3.0e-88 329.3 294 59.9
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 3.9e-88 328.9 247 72.1
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 3.9e-88 328.9 254 69.7
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 3.9e-88 328.9 298 59.7
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 6.7e-88 328.2 241 71.4
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.1e-87 327.4 240 70.0
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 1.9e-87 326.6 243 69.5
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 4.8e-86 322.0 307 61.2
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 1.1e-85 320.9 254 64.6
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 1.1e-85 320.9 254 64.6
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 4.1e-85 318.9 281 61.6
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 5.3e-85 318.5 285 63.9
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 1.3e-83 313.9 303 58.7
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 2.9e-83 312.8 216 73.6
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 1.4e-82 310.5 243 67.5
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 7.2e-82 308.1 245 69.0
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.6e-81 307.0 275 59.6
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 5.1e-80 302.0 233 66.5
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 8.7e-80 301.2 235 66.0
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 5.7e-79 298.5 221 70.1
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 2.8e-78 296.2 277 59.9
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 1.1e-77 294.3 231 68.0
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 4.6e-73 278.9 263 58.9
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 1.0e-72 277.7 206 67.5
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 1.5e-71 273.9 274 55.8
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 9.7e-71 271.2 290 55.5
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 1.2e-68 264.2 231 62.8
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 2.2e-67 260.0 195 69.2
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 2.2e-67 260.0 231 62.3
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 4.2e-66 255.8 201 66.7
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 4.2e-66 255.8 201 66.7
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 1.8e-64 250.4 224 58.9
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 3.0e-64 249.6 229 56.8
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 1.1e-61 241.1 185 70.3
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 2.4e-61 240.0 225 55.6
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 5.3e-61 238.8 210 57.6
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 9.1e-61 238.0 210 59.5
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 1.0e-59 234.6 306 50.7
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 2.2e-59 233.4 157 75.8
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 3.2e-58 229.6 164 70.7
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 4.7e-57 225.7 207 59.9
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 1.0e-56 224.6 219 54.8
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 1.4e-56 224.2 178 68.0
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.3e-54 217.6 158 69.6
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.5e-52 209.5 168 64.9
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.0e-35 154.8 118 66.9
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.5e-34 151.0 187 48.7
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 4.3e-34 149.4 204 42.6
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 1.5e-31 141.0 217 40.6
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 7.5e-31 138.7 103 68.0
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 2.1e-25 120.6 228 30.7
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 1.3e-22 111.3 65 78.5
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.2e-20 104.8 82 59.8
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 6.0e-20 102.4 69 69.6
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 1.9e-13 80.9 48 79.2
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 5.4e-13 79.3 46 80.4
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 6.0e-12 75.9 111 48.6
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 1.5e-10 71.2 78 55.1
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 6.2e-09 65.9 111 44.1
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 6.2e-09 65.9 49 69.4
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 3.1e-08 63.5 71 54.9
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 4.0e-08 63.2 50 56.0
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 6.8e-08 62.4 46 71.7


User provided reference genes

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