Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 3.5e-146 521.5 252 100.0
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 8.6e-129 463.8 249 86.7
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 3.7e-124 448.4 250 85.2
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 2.5e-120 435.6 250 82.8
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 3.3e-120 435.3 250 82.0
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 6.2e-119 431.0 250 80.8
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 6.2e-119 431.0 250 81.6
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 6.2e-119 431.0 250 81.6
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 8.1e-119 430.6 250 81.6
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 3.1e-118 428.7 250 82.0
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 1.2e-106 390.2 247 72.1
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 3.9e-105 385.2 251 68.9
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 2.5e-104 382.5 249 70.7
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 4.3e-104 381.7 246 71.5
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 4.3e-104 381.7 249 71.5
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 4.3e-104 381.7 245 71.0
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 5.6e-104 381.3 251 69.3
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.6e-103 379.8 249 71.1
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 3.6e-103 378.6 248 70.2
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 1.4e-102 376.7 250 70.4
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 5.3e-102 374.8 248 69.4
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 6.9e-102 374.4 251 68.5
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 9.0e-102 374.0 247 69.2
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.2e-101 373.6 250 68.4
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 2.0e-101 372.9 250 68.4
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 2.0e-101 372.9 250 68.4
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 4.5e-101 371.7 250 74.0
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 9.9e-101 370.5 250 67.6
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 6.4e-100 367.9 251 67.7
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 6.4e-100 367.9 251 67.7
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 1.4e-99 366.7 250 66.4
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 3.2e-99 365.5 247 68.0
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 9.3e-99 364.0 247 67.2
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 2.1e-98 362.8 247 66.8
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 2.7e-98 362.5 251 67.3
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 3.5e-98 362.1 249 65.5
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.5e-98 362.1 246 67.1
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 3.5e-98 362.1 250 66.4
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.0e-97 360.5 250 67.2
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 1.3e-97 360.1 250 66.4
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.8e-97 359.8 247 66.4
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 2.3e-97 359.4 257 66.1
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 3.9e-97 358.6 249 66.3
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 5.1e-97 358.2 247 66.4
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 8.7e-97 357.5 251 66.1
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.5e-96 356.7 247 65.6
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 3.3e-96 355.5 250 64.4
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 5.6e-96 354.8 250 63.6
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 9.6e-96 354.0 250 63.6
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 3.7e-95 352.1 249 64.3
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 8.1e-95 350.9 247 65.6
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 1.8e-94 349.7 247 65.2
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 3.1e-94 349.0 251 63.7
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 3.1e-94 349.0 251 63.7
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 4.0e-94 348.6 251 64.1
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 6.9e-94 347.8 247 65.2
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 3.4e-93 345.5 246 63.4
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 4.5e-93 345.1 251 63.7
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 1.7e-92 343.2 272 59.2
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 2.2e-92 342.8 250 61.6
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 2.2e-92 342.8 251 63.3
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 2.9e-92 342.4 250 61.6
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 4.9e-92 341.7 250 64.0
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 1.1e-91 340.5 251 62.9
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 1.4e-91 340.1 250 61.2
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 1.4e-91 340.1 193 85.0
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 1.9e-91 339.7 250 62.0
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 1.9e-91 339.7 218 67.9
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 3.2e-91 339.0 250 62.4
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 4.2e-91 338.6 250 62.0
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 9.3e-91 337.4 250 62.0
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 9.3e-91 337.4 251 62.5
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 1.2e-90 337.0 250 60.8
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 1.0e-89 334.0 246 60.6
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 1.8e-89 333.2 250 60.4
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 2.3e-89 332.8 247 61.5
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 3.0e-89 332.4 250 60.8
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 3.0e-89 332.4 251 58.6
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 6.7e-89 331.3 250 60.4
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 8.7e-89 330.9 250 60.4
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 1.5e-88 330.1 245 62.0
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 3.3e-88 328.9 250 60.0
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.1e-87 326.2 251 62.2
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 4.0e-86 322.0 250 58.4
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 7.9e-82 307.8 269 56.5
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.8e-81 306.6 226 62.4
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 3.9e-81 305.4 226 62.4
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 8.2e-79 297.7 250 56.4
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 6.9e-78 294.7 251 55.0
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.0e-76 290.8 195 65.6
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 6.5e-76 288.1 249 57.8
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.1e-75 287.3 249 57.4
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 1.2e-74 283.9 250 53.6
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.1e-74 283.1 188 66.5
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 7.9e-74 281.2 184 65.8
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 5.1e-73 278.5 203 72.4
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.7e-71 273.5 188 63.3
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 2.9e-68 262.7 176 69.3
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.4e-67 260.4 148 80.4
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 1.2e-66 257.3 250 46.8
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 3.6e-66 255.8 250 52.4
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 7.9e-66 254.6 243 51.9
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 1.4e-65 253.8 162 67.3
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 1.8e-65 253.4 249 47.0
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 6.7e-65 251.5 248 46.4
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.4e-62 243.0 214 55.1
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 2.0e-61 240.0 249 46.6
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 5.9e-61 238.4 154 67.5
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.1e-59 234.2 153 65.4
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.7e-50 203.0 240 47.9
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 6.1e-50 201.8 175 54.9
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.4e-49 200.7 240 47.5
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 4.0e-49 199.1 157 62.4
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 2.8e-47 193.0 166 59.6
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 1.5e-40 170.6 216 34.7
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 1.3e-39 167.5 127 56.7
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.8e-39 166.4 200 45.5
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.4e-38 164.1 228 43.0
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 5.4e-38 162.2 102 77.5
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 7.7e-37 158.3 100 76.0
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 1.7e-36 157.1 127 60.6
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 1.6e-34 150.6 112 57.1
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.4e-30 136.7 123 58.5
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 3.5e-29 132.9 211 34.6
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.5e-24 117.5 74 66.2
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 1.7e-20 104.0 95 55.8
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 4.3e-19 99.4 75 57.3
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 8.0e-18 95.1 66 72.7
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 4.1e-14 82.8 75 61.3
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.1e-13 80.5 67 62.7
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.0e-12 76.6 79 49.4
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 1.1e-06 58.2 35 88.6


User provided reference genes

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