Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 2.6e-74 282.0 143 100.0
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 2.3e-54 215.7 140 80.7
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 6.7e-54 214.2 142 78.2
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 1.4e-51 206.5 140 76.4
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.3e-44 183.3 142 71.1
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 6.3e-44 181.0 142 70.4
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 7.0e-43 177.6 140 65.7
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 9.1e-43 177.2 140 67.1
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 3.5e-42 175.3 138 66.7
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 7.7e-42 174.1 138 61.6
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 3.8e-41 171.8 140 67.1
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 6.5e-41 171.0 140 64.3
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.1e-40 170.2 138 60.9
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 1.5e-40 169.9 138 63.8
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.9e-40 169.5 138 60.9
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 3.3e-40 168.7 138 61.6
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 4.2e-40 168.3 138 60.9
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 5.5e-40 167.9 139 59.7
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 5.5e-40 167.9 140 64.3
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 7.2e-40 167.5 142 62.0
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 7.2e-40 167.5 140 63.6
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.2e-39 166.8 139 63.3
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 1.6e-39 166.4 140 64.3
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 2.1e-39 166.0 141 63.1
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 2.8e-39 165.6 138 60.1
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 2.8e-39 165.6 140 62.9
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 3.6e-39 165.2 140 64.3
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 8.0e-39 164.1 138 60.9
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 8.0e-39 164.1 139 61.2
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 8.0e-39 164.1 138 60.1
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 8.0e-39 164.1 138 63.0
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 1.0e-38 163.7 138 60.9
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 1.8e-38 162.9 135 63.7
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 1.8e-38 162.9 138 60.1
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 2.3e-38 162.5 139 62.6
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 2.3e-38 162.5 140 64.3
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.0e-38 162.2 138 60.1
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.0e-38 162.2 138 60.1
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 3.0e-38 162.2 141 61.0
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 3.0e-38 162.2 142 62.0
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 4.0e-38 161.8 138 64.5
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 4.0e-38 161.8 140 63.6
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 5.2e-38 161.4 138 59.4
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 8.9e-38 160.6 140 62.1
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 8.9e-38 160.6 143 63.6
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 8.9e-38 160.6 140 62.1
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.2e-37 160.2 138 59.4
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.2e-37 160.2 138 65.2
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 4.4e-37 158.3 134 62.7
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 4.4e-37 158.3 138 64.5
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 4.4e-37 158.3 142 62.0
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 4.4e-37 158.3 142 62.0
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 5.7e-37 157.9 141 61.7
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 7.5e-37 157.5 140 58.6
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 1.3e-36 156.8 141 61.7
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 1.3e-36 156.8 137 61.3
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 2.2e-36 156.0 140 62.1
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 2.2e-36 156.0 141 60.3
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 4.9e-36 154.8 139 59.0
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 4.9e-36 154.8 140 60.7
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 8.3e-36 154.1 141 61.7
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 8.3e-36 154.1 138 60.1
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 8.3e-36 154.1 140 60.7
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 8.3e-36 154.1 138 58.0
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.4e-35 153.3 145 62.1
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 1.4e-35 153.3 139 61.2
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 1.4e-35 153.3 138 60.1
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 2.4e-35 152.5 142 61.3
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 4.1e-35 151.8 138 60.9
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 5.4e-35 151.4 138 60.9
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 7.0e-35 151.0 131 61.8
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 9.2e-35 150.6 155 54.8
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 9.2e-35 150.6 131 61.8
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 1.2e-34 150.2 139 61.9
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.2e-34 150.2 131 61.8
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 5.9e-34 147.9 167 51.5
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 5.9e-34 147.9 142 56.3
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 7.8e-34 147.5 143 56.6
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 1.0e-33 147.1 141 56.7
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 1.0e-33 147.1 139 56.1
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 1.0e-33 147.1 140 58.6
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 2.9e-33 145.6 141 57.4
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 3.8e-33 145.2 142 58.5
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 1.9e-32 142.9 140 60.0
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 3.3e-32 142.1 132 57.6
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 1.2e-31 140.2 142 57.0
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 1.6e-31 139.8 140 53.6
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 2.1e-31 139.4 139 56.1
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 2.1e-31 139.4 140 54.3
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 2.8e-31 139.0 142 56.3
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 3.6e-31 138.7 142 56.3
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 4.7e-31 138.3 144 57.6
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 4.7e-31 138.3 144 57.6
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 6.1e-31 137.9 142 56.3
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 8.0e-31 137.5 138 58.0
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 1.4e-30 136.7 143 57.3
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 1.4e-30 136.7 143 57.3
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 1.4e-30 136.7 143 57.3
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 1.4e-30 136.7 143 57.3
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 1.8e-30 136.3 112 64.3
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 1.8e-30 136.3 142 57.0
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 2.3e-30 136.0 139 56.1
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 8.9e-30 134.0 134 54.5
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 1.2e-29 133.7 138 58.0
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 2.6e-29 132.5 144 55.6
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 2.6e-29 132.5 141 52.5
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 4.4e-29 131.7 143 53.8
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 5.8e-29 131.3 134 56.0
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 1.3e-28 130.2 108 62.0
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 2.9e-28 129.0 156 50.0
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 4.9e-28 128.3 122 58.2
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 4.9e-28 128.3 122 58.2
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 8.3e-28 127.5 142 50.7
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 1.1e-27 127.1 168 46.4
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 1.1e-27 127.1 144 54.2
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 2.4e-27 125.9 114 62.3
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 2.4e-27 125.9 91 68.1
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.2e-26 123.6 132 53.0
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 1.6e-26 123.2 99 67.7
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 1.6e-26 123.2 152 52.0
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 2.0e-26 122.9 148 49.3
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 2.7e-26 122.5 113 59.3
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.0e-25 120.6 148 50.7
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 1.3e-25 120.2 97 66.0
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 1.7e-25 119.8 148 49.3
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 3.9e-25 118.6 141 50.4
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 5.0e-25 118.2 134 51.5
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.0e-25 118.2 107 57.0
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 6.6e-25 117.9 150 49.3
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 6.6e-25 117.9 138 50.0
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 6.6e-25 117.9 138 50.7
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.1e-24 117.1 77 75.3
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 1.5e-24 116.7 129 51.9
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 1.9e-24 116.3 107 62.6
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 2.5e-24 115.9 79 70.9
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 4.3e-24 115.2 77 74.0
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 5.6e-24 114.8 107 60.7
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 5.6e-24 114.8 132 50.0
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 7.3e-24 114.4 107 60.7
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 1.2e-23 113.6 78 71.8
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 1.2e-23 113.6 136 50.0
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 2.8e-23 112.5 115 52.2
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 4.0e-22 108.6 122 49.2
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 6.8e-22 107.8 130 53.1
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 8.9e-22 107.5 76 69.7
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 1.2e-21 107.1 76 69.7
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.5e-21 106.7 130 48.5
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 2.0e-21 106.3 78 66.7
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 2.0e-21 106.3 76 71.1
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 2.2e-20 102.8 131 48.9
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 6.4e-20 101.3 142 45.8
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 6.4e-20 101.3 84 61.9
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 1.9e-19 99.8 151 45.7
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 1.9e-19 99.8 76 61.8
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.9e-19 99.8 137 45.3
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.9e-19 99.8 137 45.3
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 5.4e-19 98.2 88 56.8
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 1.2e-18 97.1 76 59.2
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 2.1e-18 96.3 76 59.2
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 2.7e-18 95.9 136 45.6
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 7.3e-16 87.8 122 45.1
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 1.6e-15 86.7 122 44.3
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 2.1e-15 86.3 77 53.2
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 8.9e-14 80.9 55 67.3
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 5.8e-13 78.2 62 58.1
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 9.9e-13 77.4 55 65.5
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 1.3e-12 77.0 62 56.5
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 1.7e-12 76.6 83 47.0
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 2.1e-07 59.7 79 45.6
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 6.2e-07 58.2 56 50.0
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 8.1e-07 57.8 56 50.0
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 5.2e-06 55.1 81 46.9
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 5.2e-06 55.1 37 67.6


User provided reference genes

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