Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.6e-83 312.0 155 100.0
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.6e-83 312.0 155 100.0
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.8e-82 308.5 155 99.4
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.7e-82 308.1 155 98.7
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 3.9e-71 271.6 147 91.2
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 8.6e-71 270.4 155 85.2
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 1.5e-70 269.6 155 85.2
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 1.6e-64 249.6 155 78.1
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 4.6e-64 248.1 155 77.4
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 6.0e-64 247.7 155 78.1
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 1.3e-63 246.5 155 77.4
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 5.1e-63 244.6 155 72.9
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 8.6e-63 243.8 155 75.5
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 1.1e-62 243.4 155 73.5
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 3.3e-62 241.9 155 73.5
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 4.3e-62 241.5 155 73.5
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 7.3e-62 240.7 155 74.8
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 7.3e-62 240.7 155 73.5
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 2.8e-61 238.8 155 74.8
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 2.8e-61 238.8 155 71.6
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 3.6e-61 238.4 154 73.4
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 4.7e-61 238.0 155 75.5
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 8.1e-61 237.3 155 71.0
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 2.3e-60 235.7 155 74.2
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 4.0e-60 235.0 155 72.9
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 5.2e-60 234.6 155 73.5
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 5.2e-60 234.6 155 69.7
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 6.8e-60 234.2 152 73.7
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 6.8e-60 234.2 155 74.2
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 2.0e-59 232.6 155 71.6
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 2.6e-59 232.3 152 73.7
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 2.6e-59 232.3 155 69.7
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 3.4e-59 231.9 155 71.0
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 5.8e-59 231.1 155 68.4
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 9.9e-59 230.3 155 71.6
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.7e-58 229.6 155 69.7
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.2e-58 229.2 155 70.3
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.2e-58 229.2 155 70.3
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 69.7
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 3.7e-58 228.4 155 67.7
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 4.9e-58 228.0 155 72.3
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 6.4e-58 227.6 155 69.7
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 8.3e-58 227.3 155 69.7
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 8.3e-58 227.3 155 71.6
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 8.3e-58 227.3 155 71.6
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.1e-57 226.9 156 71.2
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.1e-57 226.9 156 71.2
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 1.1e-57 226.9 155 71.0
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 1.4e-57 226.5 155 71.6
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 1.4e-57 226.5 174 66.1
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.9e-57 226.1 155 71.0
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 2.4e-57 225.7 155 70.3
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 3.2e-57 225.3 155 67.1
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 4.1e-57 224.9 155 66.5
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 5.4e-57 224.6 155 69.0
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 5.4e-57 224.6 155 71.6
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 7.1e-57 224.2 155 66.5
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 7.1e-57 224.2 155 66.5
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 2.1e-56 222.6 155 69.7
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 2.7e-56 222.2 155 68.4
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 6.0e-56 221.1 155 69.0
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 7.8e-56 220.7 155 70.3
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.7e-55 219.5 155 70.3
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 1.7e-55 219.5 155 67.1
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 2.3e-55 219.2 155 66.5
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 3.9e-55 218.4 155 66.5
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 1.1e-54 216.9 155 65.8
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 1.9e-54 216.1 155 68.4
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 2.5e-54 215.7 155 67.7
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 3.3e-54 215.3 155 65.2
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 1.2e-53 213.4 155 67.7
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 1.2e-53 213.4 152 69.1
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 1.6e-53 213.0 155 67.7
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 2.1e-53 212.6 152 65.1
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 2.8e-53 212.2 155 66.5
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 2.8e-53 212.2 145 69.0
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 3.6e-53 211.8 155 63.9
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 6.2e-53 211.1 155 65.8
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 8.1e-53 210.7 154 64.9
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 8.1e-53 210.7 155 67.7
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 8.1e-53 210.7 155 65.2
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 5.2e-52 208.0 155 62.6
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 6.8e-52 207.6 155 61.3
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 8.9e-52 207.2 135 71.9
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 8.9e-52 207.2 153 66.7
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 8.9e-52 207.2 155 65.8
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 2.0e-51 206.1 155 65.2
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 2.6e-51 205.7 147 67.3
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 4.4e-51 204.9 155 65.8
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 2.2e-50 202.6 156 63.5
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 6.4e-50 201.1 214 50.9
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 3.2e-49 198.7 156 62.8
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 4.2e-49 198.4 156 62.2
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 4.2e-49 198.4 155 60.6
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 9.2e-49 197.2 155 65.2
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 9.2e-49 197.2 133 69.2
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 2.1e-48 196.1 151 63.6
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 3.5e-48 195.3 148 66.2
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 6.0e-48 194.5 155 61.3
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 7.8e-48 194.1 133 69.9
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 7.8e-48 194.1 156 60.9
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 7.8e-48 194.1 145 62.8
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 1.0e-47 193.7 153 60.1
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.7e-47 193.0 150 64.7
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 5.1e-47 191.4 188 52.1
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 6.6e-47 191.0 156 60.3
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 6.6e-47 191.0 127 70.1
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 1.9e-46 189.5 155 60.6
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.3e-46 188.7 150 64.0
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.3e-45 186.8 162 60.5
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.6e-45 186.4 148 62.2
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 2.8e-45 185.7 156 58.3
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 8.1e-45 184.1 146 63.7
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 3.8e-42 175.3 152 53.9
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 4.2e-41 171.8 154 51.9
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 5.4e-41 171.4 154 51.9
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 1.2e-40 170.2 126 59.5
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 1.6e-40 169.9 126 59.5
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.3e-39 166.8 153 51.6
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 2.3e-39 166.0 128 59.4
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 3.3e-38 162.2 114 69.3
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 5.6e-38 161.4 106 69.8
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 7.3e-38 161.0 153 54.2
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 1.3e-37 160.2 106 68.9
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 3.4e-35 152.1 99 73.7
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 1.3e-34 150.2 144 50.7
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 4.9e-34 148.3 104 69.2
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 7.1e-33 144.4 89 76.4
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 4.6e-32 141.7 103 64.1
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.1e-30 137.1 68 98.5
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 1.1e-28 130.6 142 47.9
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 9.0e-28 127.5 128 51.6
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 1.5e-27 126.7 129 48.1
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 2.0e-27 126.3 152 48.7
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 4.5e-27 125.2 83 69.9
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 8.4e-26 120.9 109 57.8
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 8.4e-26 120.9 61 98.4
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 8.4e-26 120.9 61 98.4
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 1.7e-18 96.7 128 39.8
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 3.8e-18 95.5 124 40.3
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 1.1e-14 84.0 48 79.2
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 7.4e-14 81.3 129 33.3
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 6.3e-13 78.2 68 57.4


User provided reference genes

Program Settings