Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 1.0e-130 470.3 277 100.0
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 2.2e-37 160.2 236 42.8
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 3.8e-37 159.5 260 38.5
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 5.2e-34 149.1 239 36.0
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 1.2e-33 147.9 257 37.0
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 1.5e-33 147.5 237 36.3
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 2.0e-33 147.1 238 37.8
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 2.6e-33 146.7 238 36.6
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 4.4e-33 146.0 237 35.9
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 4.1e-31 139.4 249 34.9
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 5.9e-30 135.6 238 34.9
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 8.5e-29 131.7 177 42.4
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 1.9e-28 130.6 165 43.0
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.9e-28 130.6 165 43.0
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 3.2e-28 129.8 165 42.4
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 1.2e-27 127.9 154 46.8
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 3.6e-27 126.3 233 35.6
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 3.6e-27 126.3 269 33.1
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 6.1e-27 125.6 116 52.6
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 3.0e-26 123.2 225 35.1
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 1.5e-25 120.9 236 36.9
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 3.4e-25 119.8 242 34.3
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 1.7e-24 117.5 241 36.5
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 2.4e-23 113.6 143 44.8
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 2.0e-22 110.5 281 29.2
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 4.5e-22 109.4 164 37.2
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 1.7e-21 107.5 108 50.0
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 5.0e-21 105.9 158 39.2
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 6.5e-21 105.5 234 35.0
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 1.5e-20 104.4 178 36.5
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 3.2e-20 103.2 232 34.9
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 4.2e-20 102.8 235 34.0
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 9.5e-20 101.7 222 31.5
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 2.8e-19 100.1 98 50.0
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 3.6e-19 99.8 98 50.0
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 3.6e-19 99.8 170 40.0
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 3.6e-19 99.8 99 51.5
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 3.6e-19 99.8 233 32.6
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 4.7e-19 99.4 99 50.5
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 6.1e-19 99.0 99 48.5
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 6.1e-19 99.0 99 48.5
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 1.8e-18 97.4 98 49.0
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 4.0e-18 96.3 221 30.8
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 5.2e-18 95.9 115 43.5
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 2.8e-16 90.1 192 34.4
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 4.9e-16 89.4 93 53.8
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 4.9e-16 89.4 234 30.3
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 4.1e-15 86.3 71 64.8
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 5.4e-15 85.9 83 51.8
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 2.0e-14 84.0 158 34.2
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 2.0e-14 84.0 99 45.5
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 3.5e-14 83.2 304 27.0
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 5.9e-14 82.4 231 28.1
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 2.9e-13 80.1 101 45.5
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 2.9e-13 80.1 158 33.5
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 3.8e-13 79.7 70 58.6
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 3.8e-13 79.7 239 28.5
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 6.6e-13 79.0 221 29.0
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 1.5e-12 77.8 70 57.1
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 2.8e-11 73.6 238 26.9
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 6.1e-11 72.4 247 27.1
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 6.1e-11 72.4 237 27.0
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 6.1e-11 72.4 68 54.4
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 8.0e-11 72.0 100 41.0
RhsimUnG0220500 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.8e-10 70.9 51 60.8
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 3.0e-10 70.1 53 67.9
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 4.0e-10 69.7 96 35.4
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 5.2e-10 69.3 83 47.0
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 6.8e-10 68.9 83 44.6
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 8.9e-10 68.6 87 43.7
Cpa.g.sc13.131 Carica papaya HOM05D007402 ORTHO05D003673 2.6e-09 67.0 176 24.4
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 3.4e-09 66.6 70 47.1
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 4.4e-09 66.2 236 25.8
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 1.3e-08 64.7 236 25.8
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 1.7e-08 64.3 66 50.0
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 1.7e-08 64.3 213 27.2
SGA_v2.0_scaffold296G47545 Striga asiatica HOM05D004783 ORTHO05D005581 1.7e-08 64.3 170 25.9
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 2.2e-08 63.9 184 26.1
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 2.2e-08 63.9 192 26.6
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 2.9e-08 63.5 69 50.7
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 2.9e-08 63.5 69 50.7
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 4.9e-08 62.8 87 39.1
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 6.4e-08 62.4 49 57.1
Lj5P156T63 Lonicera japonica HOM05D006707 ORTHO05D008243 6.4e-08 62.4 49 61.2
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 8.3e-08 62.0 237 24.5
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 8.3e-08 62.0 49 65.3
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 8.3e-08 62.0 174 23.6
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 8.3e-08 62.0 174 23.6
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 8.3e-08 62.0 49 63.3
BraA05t22010Z Brassica rapa HOM05D006707 ORTHO05D008243 1.4e-07 61.2 82 46.3
Sabra16G0092100 Salix brachista HOM05D000855 ORTHO05D008530 1.4e-07 61.2 184 23.9
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 1.4e-07 61.2 68 48.5
Atru.chr9.109 Acer truncatum HOM05D004783 ORTHO05D005581 1.8e-07 60.8 139 31.7
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 2.4e-07 60.5 174 23.6
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 2.4e-07 60.5 71 42.3
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 2.4e-07 60.5 174 23.0
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 2.4e-07 60.5 184 23.4
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 3.2e-07 60.1 71 42.3
Ciclev10011148m.g Citrus clementina HOM05D000855 ORTHO05D008530 3.2e-07 60.1 174 20.7
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 3.2e-07 60.1 174 21.3
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 3.2e-07 60.1 184 22.8
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 5.4e-07 59.3 182 25.8
Lj5g0021887 Lotus japonicus HOM05D000855 ORTHO05D008530 5.4e-07 59.3 184 26.1
Nn2g12986 Nelumbo nucifera HOM05D000855 ORTHO05D008530 5.4e-07 59.3 184 23.4
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 7.0e-07 58.9 49 53.1
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 9.2e-07 58.5 184 25.0
BcaB01g04883 Brassica carinata HOM05D007340 ORTHO05D008979 1.6e-06 57.8 184 25.5
CAN.G630.84 Capsicum annuum HOM05D006556 ORTHO05D008146 1.6e-06 57.8 192 25.5
CiPaw.02G077000 Carya illinoinensis HOM05D000855 ORTHO05D008530 1.6e-06 57.8 174 22.4
AUR62040505 Chenopodium quinoa HOM05D000855 ORTHO05D008530 1.6e-06 57.8 174 23.6
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 1.6e-06 57.8 69 49.3
QL07p045308 Quercus lobata HOM05D000855 ORTHO05D008530 1.6e-06 57.8 184 23.9
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 2.0e-06 57.4 69 46.4
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 2.0e-06 57.4 70 41.4
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 2.0e-06 57.4 184 24.5
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 2.7e-06 57.0 174 21.3
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 2.7e-06 57.0 69 44.9
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 3.5e-06 56.6 174 20.7
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 3.5e-06 56.6 32 81.2
FvH4_6g15290 Fragaria vesca HOM05D000855 ORTHO05D008530 3.5e-06 56.6 184 22.3
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 3.5e-06 56.6 174 21.8
HPP92_021332 Vanilla planifolia HOM05D007212 ORTHO05D000003 3.5e-06 56.6 129 26.4
Eucgr.F01165 Eucalyptus grandis HOM05D000424 ORTHO05D000355 4.6e-06 56.2 126 26.2
Prupe.6G241600 Prunus persica HOM05D000855 ORTHO05D008530 4.6e-06 56.2 184 22.8
QL10p028425 Quercus lobata HOM05D006707 ORTHO05D008243 4.6e-06 56.2 45 60.0
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 5.9e-06 55.8 174 20.7
EL10Ac7g17347 Beta vulgaris HOM05D000855 ORTHO05D008530 5.9e-06 55.8 174 23.6


User provided reference genes

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