Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 0.0e+00 1865.9 921 100.0
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 0.0e+00 1587.8 920 85.4
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 0.0e+00 1461.4 922 80.3
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 0.0e+00 1305.0 962 69.0
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 0.0e+00 1295.8 946 70.7
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 0.0e+00 1289.6 936 70.8
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 0.0e+00 1250.0 946 68.8
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 0.0e+00 1217.6 872 71.8
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 0.0e+00 1167.5 872 69.6
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 3.3e-303 1045.0 696 73.4
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 7.4e-303 1043.9 957 57.8
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 1.1e-301 1040.0 933 58.7
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 5.5e-298 1027.7 1000 54.7
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 6.7e-296 1020.8 974 56.0
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 1.1e-295 1020.0 1000 54.2
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 1.9e-295 1019.2 961 56.0
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 9.6e-295 1016.9 929 57.5
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 9.6e-295 1016.9 961 57.4
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 1.3e-294 1016.5 955 57.2
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 1.3e-294 1016.5 1012 55.7
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.8e-294 1015.4 929 57.4
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 6.3e-294 1014.2 947 56.4
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.5e-292 1009.6 978 55.5
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 4.5e-292 1008.1 972 55.3
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 5.9e-292 1007.7 956 56.2
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 8.5e-291 1003.8 961 55.5
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 5.5e-290 1001.1 942 56.4
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 7.2e-290 1000.7 895 57.8
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 7.9e-289 997.3 1013 54.6
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 1.0e-288 996.9 950 56.0
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 9.0e-285 983.8 954 54.7
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 6.5e-283 977.6 953 54.8
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 1.9e-282 976.1 963 53.7
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 9.4e-282 973.8 747 64.4
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 2.7e-281 972.2 955 53.9
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 3.6e-281 971.8 896 56.6
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 2.6e-279 965.7 995 52.7
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 6.9e-277 957.6 954 54.6
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.0e-276 956.1 971 54.9
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 2.0e-276 956.1 958 53.5
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 2.6e-276 955.7 956 54.3
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 1.1e-274 950.3 927 55.6
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.8e-272 943.0 937 55.3
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.2e-270 936.0 980 51.7
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 8.2e-270 934.1 974 50.9
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 1.1e-269 933.7 982 52.3
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 1.4e-269 933.3 973 51.3
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 5.3e-269 931.4 978 51.4
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 7.0e-269 931.0 993 49.8
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 1.1e-266 923.7 888 54.2
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 4.2e-266 921.8 936 53.1
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 2.1e-265 919.5 945 53.2
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 3.6e-265 918.7 945 52.5
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 2.3e-264 916.0 748 61.1
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 8.8e-264 914.1 929 53.6
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 2.8e-262 909.1 867 56.2
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 4.8e-262 908.3 1003 49.7
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 2.2e-259 899.4 1000 49.5
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 3.2e-258 895.6 922 51.7
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 8.0e-257 891.0 979 48.0
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 1.8e-256 889.8 984 50.5
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 2.3e-256 889.4 932 51.0
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 4.0e-256 888.6 948 50.6
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 6.8e-256 887.9 1000 49.8
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 8.8e-256 887.5 932 51.3
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 3.4e-255 885.6 923 51.2
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 7.5e-255 884.4 932 52.3
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 1.1e-253 880.6 923 50.9
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 1.1e-253 880.6 930 51.6
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.8e-253 879.8 983 49.7
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 4.1e-253 878.6 932 51.0
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 4.5e-252 875.2 962 50.2
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 3.8e-251 872.1 1008 49.1
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 3.8e-251 872.1 950 51.7
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 3.0e-248 862.4 685 62.3
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 6.8e-248 861.3 999 48.4
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 5.7e-239 831.6 953 48.5
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 5.9e-236 821.6 889 50.5
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 9.5e-234 814.3 975 48.1
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 2.0e-231 806.6 816 53.6
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 4.4e-231 805.4 979 46.3
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.1e-229 800.8 989 47.1
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 4.6e-228 795.4 904 50.3
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 1.3e-227 793.9 957 46.0
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.9e-222 776.2 952 46.3
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 1.1e-210 737.6 568 62.0
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 2.6e-207 726.5 526 67.3
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 9.9e-207 724.5 924 46.2
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 4.0e-200 702.6 553 62.7
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 5.6e-194 682.2 461 70.3
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 7.4e-194 681.8 959 43.5
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 1.3e-193 681.0 779 49.4
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 8.4e-190 668.3 746 50.7
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 7.4e-186 655.2 733 51.2
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 6.9e-184 648.7 1036 38.8
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.7e-180 636.7 927 40.9
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 3.7e-177 626.3 482 64.5
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 4.8e-177 625.9 835 41.6
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 4.8e-177 625.9 834 41.7
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.0e-166 589.3 717 44.8
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 6.7e-163 578.9 359 81.6
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 6.3e-161 572.4 605 49.8
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 1.8e-160 570.9 315 84.4
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.9e-160 568.9 802 41.6
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.0e-147 526.9 803 41.0
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 9.7e-146 521.9 1007 35.6
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-138 498.4 933 35.2
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.7e-135 485.7 485 50.1
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 2.3e-134 484.2 443 57.3
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 2.3e-134 484.2 443 57.3
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.9e-129 466.5 667 41.8
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 1.2e-124 451.8 279 74.9
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-122 445.3 633 41.4
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 9.8e-122 442.2 408 61.3
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 1.4e-115 421.8 600 44.8
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.0e-102 377.5 817 32.8
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 1.2e-95 355.5 481 45.5
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-90 338.6 631 36.5
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.9e-89 334.3 750 33.3
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.1e-88 332.4 319 54.9
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 7.8e-87 326.2 441 43.3
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 9.0e-83 312.8 449 45.2
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 2.2e-81 308.1 397 42.1
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 1.7e-73 282.0 653 30.2
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 7.4e-69 266.5 392 42.6
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 1.8e-67 261.9 159 73.0
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 9.0e-67 259.6 190 72.1
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 2.5e-61 241.5 270 45.2
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 1.1e-59 236.1 139 77.7
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.8e-54 218.8 190 53.7
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 9.7e-53 213.0 714 28.9
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-46 193.0 159 54.1
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 2.0e-45 188.7 107 82.2
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.4e-43 182.6 382 35.1
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 3.1e-43 181.4 109 73.4
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 7.7e-42 176.8 429 30.1
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 2.1e-39 168.7 89 87.6
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.7e-39 168.3 164 54.9
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 1.4e-38 166.0 111 71.2
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 1.5e-37 162.5 265 37.4
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.7e-36 159.1 159 54.1
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 2.8e-36 158.3 194 45.4
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 1.3e-33 149.4 105 67.6
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.2e-32 143.7 628 27.1
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 1.5e-24 119.4 84 71.4
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.4e-22 112.8 258 36.0
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.2e-21 109.8 85 70.6
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 2.2e-20 105.5 86 54.7
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 3.1e-19 101.7 78 59.0
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 1.1e-16 93.2 123 45.5
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 4.9e-12 77.8 64 56.2
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 8.3e-12 77.0 88 50.0
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 6.6e-09 67.4 73 49.3


User provided reference genes

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