Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 9.5e-71 270.0 131 100.0
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 1.7e-51 206.1 123 78.0
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 1.9e-34 149.4 123 55.3
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 8.7e-32 140.6 107 60.7
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 2.5e-31 139.0 126 50.8
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 2.6e-28 129.0 122 47.5
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 1.3e-27 126.7 122 49.2
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 1.3e-27 126.7 122 49.2
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 4.9e-27 124.8 122 49.2
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.4e-26 122.5 128 48.4
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 4.2e-26 121.7 120 45.8
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 7.1e-26 120.9 127 48.0
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 2.1e-25 119.4 119 51.3
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 5.1e-24 114.8 128 43.8
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 5.1e-24 114.8 118 47.5
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 8.7e-24 114.0 120 46.7
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 1.1e-23 113.6 120 45.0
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.5e-23 113.2 120 44.2
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 1.9e-23 112.8 119 44.5
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 4.3e-23 111.7 119 43.7
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 4.3e-23 111.7 121 43.0
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 4.3e-23 111.7 120 44.2
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 4.3e-23 111.7 120 45.0
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 7.4e-23 110.9 119 43.7
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 9.6e-23 110.5 120 44.2
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 1.3e-22 110.2 119 44.5
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 1.6e-22 109.8 119 43.7
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.1e-22 109.4 120 44.2
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 2.1e-22 109.4 118 44.9
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.1e-22 109.4 118 44.1
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 3.7e-22 108.6 120 48.3
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 4.8e-22 108.2 119 43.7
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.8e-22 108.2 119 43.7
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 4.8e-22 108.2 119 42.0
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 4.8e-22 108.2 124 44.4
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 6.2e-22 107.8 118 44.1
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 6.2e-22 107.8 119 43.7
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 6.2e-22 107.8 119 43.7
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 6.2e-22 107.8 120 46.7
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 6.2e-22 107.8 120 41.7
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 8.1e-22 107.5 118 44.1
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.1e-22 107.5 119 43.7
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 1.1e-21 107.1 125 41.6
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.1e-21 107.1 108 48.1
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 1.1e-21 107.1 120 40.8
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 1.4e-21 106.7 119 41.2
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.4e-21 106.7 122 42.6
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.4e-21 106.7 128 43.0
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.4e-21 106.7 121 43.0
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 1.8e-21 106.3 125 44.0
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 2.4e-21 105.9 126 40.5
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 2.4e-21 105.9 123 42.3
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 2.4e-21 105.9 120 41.7
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.4e-21 105.9 119 42.9
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 2.4e-21 105.9 118 43.2
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 4.0e-21 105.1 120 45.8
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 4.0e-21 105.1 112 42.9
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 4.0e-21 105.1 121 46.3
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 5.3e-21 104.8 122 37.7
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 5.3e-21 104.8 118 44.1
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 5.3e-21 104.8 118 41.5
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 5.3e-21 104.8 120 40.8
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 6.9e-21 104.4 119 42.0
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 6.9e-21 104.4 119 42.0
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 6.9e-21 104.4 119 42.0
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 6.9e-21 104.4 120 42.5
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 6.9e-21 104.4 119 43.7
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.9e-21 104.4 128 41.4
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 6.9e-21 104.4 111 45.0
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 6.9e-21 104.4 121 42.1
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 9.0e-21 104.0 120 44.2
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 9.0e-21 104.0 120 44.2
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.2e-20 103.6 111 45.9
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.2e-20 103.6 118 42.4
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 1.2e-20 103.6 118 42.4
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 1.5e-20 103.2 121 40.5
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.5e-20 103.2 120 44.2
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.5e-20 103.2 120 39.2
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.5e-20 103.2 120 42.5
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 1.5e-20 103.2 122 41.8
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 1.5e-20 103.2 109 45.9
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 2.0e-20 102.8 120 41.7
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.0e-20 102.8 111 42.3
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 2.6e-20 102.4 119 42.0
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 2.6e-20 102.4 119 42.0
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.6e-20 102.4 109 45.9
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 2.6e-20 102.4 120 42.5
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 2.6e-20 102.4 122 41.0
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 3.4e-20 102.1 121 43.8
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.4e-20 102.1 126 41.3
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 3.4e-20 102.1 118 41.5
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 4.5e-20 101.7 119 40.3
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 4.5e-20 101.7 118 41.5
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 4.5e-20 101.7 107 45.8
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 5.8e-20 101.3 119 41.2
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 5.8e-20 101.3 121 40.5
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 5.8e-20 101.3 119 42.9
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 7.6e-20 100.9 123 41.5
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 7.6e-20 100.9 112 44.6
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 1.0e-19 100.5 121 41.3
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 1.0e-19 100.5 120 41.7
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 1.3e-19 100.1 121 41.3
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 1.3e-19 100.1 119 41.2
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 1.3e-19 100.1 119 41.2
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 1.3e-19 100.1 119 41.2
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 1.3e-19 100.1 119 41.2
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 1.3e-19 100.1 112 44.6
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.3e-19 100.1 111 44.1
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.3e-19 100.1 111 44.1
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 1.7e-19 99.8 119 39.5
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.7e-19 99.8 121 40.5
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 2.2e-19 99.4 121 41.3
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 2.2e-19 99.4 120 43.3
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 2.9e-19 99.0 125 40.8
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.9e-19 99.0 111 43.2
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 2.9e-19 99.0 121 39.7
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 4.9e-19 98.2 120 38.3
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 4.9e-19 98.2 121 39.7
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 4.9e-19 98.2 121 39.7
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 4.9e-19 98.2 118 40.7
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 4.9e-19 98.2 126 41.3
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 4.9e-19 98.2 119 41.2
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 6.5e-19 97.8 109 43.1
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 6.5e-19 97.8 119 41.2
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 8.4e-19 97.4 111 41.4
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 8.4e-19 97.4 118 40.7
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 1.1e-18 97.1 118 41.5
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.1e-18 97.1 114 43.0
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.1e-18 97.1 119 40.3
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 2.5e-18 95.9 121 39.7
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 2.5e-18 95.9 94 46.8
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 5.5e-18 94.7 107 43.9
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 9.3e-18 94.0 91 49.5
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 9.3e-18 94.0 120 43.3
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 9.3e-18 94.0 121 38.0
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 1.2e-17 93.6 119 40.3
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 2.7e-17 92.4 122 38.5
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 3.5e-17 92.0 122 39.3
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 3.5e-17 92.0 122 41.0
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 4.6e-17 91.7 109 42.2
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 4.6e-17 91.7 122 39.3
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 6.0e-17 91.3 120 40.8
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 7.9e-17 90.9 120 41.7
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.3e-16 90.1 109 39.4
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 3.0e-16 89.0 118 39.0
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.9e-16 88.6 111 38.7
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 1.5e-15 86.7 128 32.8
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.9e-15 86.3 124 38.7
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 2.5e-15 85.9 91 38.5
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 2.5e-15 85.9 113 38.9
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 3.3e-15 85.5 118 37.3
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.7e-15 84.7 92 42.4
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.3e-14 83.6 90 42.2
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.1e-14 82.8 106 37.7
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 3.7e-14 82.0 119 36.1
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 4.8e-14 81.6 118 37.3
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 1.1e-13 80.5 111 39.6
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 1.1e-13 80.5 96 41.7
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.3e-11 73.6 89 40.4
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.7e-11 73.2 86 39.5
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.1e-10 70.5 95 38.9
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.5e-09 65.5 67 43.3
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.8e-08 63.2 73 38.4
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.5e-07 60.1 75 38.7
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 4.3e-07 58.5 72 43.1


User provided reference genes

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