Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 2958.7 1500 100.0
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 2663.6 1502 88.9
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 2649.0 1502 88.3
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 2413.3 1500 81.1
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 2398.6 1500 79.9
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 2396.7 1502 79.8
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 2388.6 1500 79.8
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 2372.8 1500 79.5
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 2307.7 1505 77.5
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 2294.2 1525 76.7
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 2294.2 1525 76.7
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 2023.8 1526 70.0
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1916.0 1553 66.3
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1874.8 1504 63.8
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1830.1 1509 61.8
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1781.9 1503 60.8
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1778.1 1542 60.2
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1777.3 1508 60.4
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1756.5 1519 60.6
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1751.5 1512 58.9
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1729.1 1515 59.5
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1713.7 1501 58.0
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1696.4 1518 57.8
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1679.1 1539 57.8
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1679.1 1534 57.7
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1674.4 1498 57.9
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1669.8 1508 57.3
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1669.4 1458 59.2
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1668.7 1513 57.7
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1668.3 1495 58.3
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1648.3 1516 57.3
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1638.2 1512 56.6
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1628.2 1506 57.1
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1626.7 1512 56.2
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1590.9 1496 56.3
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1583.9 1621 52.6
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1581.2 1518 53.8
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1579.3 1503 56.2
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1577.4 1504 54.5
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1559.3 1518 53.5
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1555.0 1511 55.5
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1554.7 1501 53.8
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1550.0 1507 54.1
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1550.0 1518 53.0
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1548.9 1504 55.1
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1540.4 1516 54.6
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1537.3 1513 53.1
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1534.6 1436 56.9
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1533.9 1514 53.3
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1527.7 1509 53.2
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1527.3 1200 65.2
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1517.3 1503 52.8
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1498.8 1536 51.8
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1494.9 1504 52.7
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1477.2 1490 52.8
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1471.4 1284 59.5
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1465.7 1507 51.9
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1461.0 1494 51.6
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1454.1 1513 52.6
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1449.5 1522 51.3
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1447.2 1501 51.5
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1431.0 1527 49.6
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1390.6 1502 50.3
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1385.2 1507 49.7
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1383.2 1232 58.8
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1368.2 1511 49.2
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1354.0 1515 48.6
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1352.8 1507 48.8
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1350.9 1507 48.8
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1346.3 1445 50.0
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1343.9 1509 48.1
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1340.5 1501 47.4
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1335.9 1505 48.4
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1333.5 1510 47.8
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1322.4 1504 48.1
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1322.0 1506 47.9
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1320.8 1537 47.0
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1317.8 1751 43.1
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1317.0 1509 47.6
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1308.5 1515 48.0
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1304.7 1538 46.7
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1236.9 1389 49.2
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1216.8 1550 44.2
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1191.0 1533 44.2
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1188.3 1156 54.2
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1184.1 1122 56.2
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1181.8 1287 49.7
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1168.7 1132 55.7
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1166.0 1120 55.4
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1164.8 1507 43.2
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1154.4 1053 57.9
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 3.7e-304 1048.9 574 92.0
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 2.0e-302 1043.1 986 55.9
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 9.6e-252 874.8 1143 43.7
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.2e-239 832.8 1140 41.6
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 1.1e-234 818.1 1548 35.3
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 2.0e-233 813.9 1539 34.0
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 9.7e-220 768.5 1541 34.5
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 1.2e-209 734.9 588 64.5
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 1.5e-207 728.0 1017 42.6
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 3.4e-204 716.8 573 64.9
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 5.7e-204 716.1 971 41.4
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 3.0e-192 677.2 1019 40.4
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 8.6e-192 675.6 645 55.3
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 4.0e-189 666.8 1015 39.9
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 1.5e-188 664.8 1016 39.6
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 3.3e-183 647.1 1401 32.6
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.6e-182 643.7 590 57.1
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.5e-180 638.3 602 55.3
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 4.0e-165 587.0 366 82.8
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 1.4e-146 525.4 478 58.2
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 4.9e-139 500.4 572 49.1
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 4.5e-124 450.7 563 44.8
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 8.8e-120 436.4 573 44.3
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 3.4e-116 424.5 1074 31.7
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 1.5e-103 382.5 526 43.2
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-99 368.2 987 27.9
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.7e-94 351.3 544 39.2
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 5.4e-93 347.4 495 41.0
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 5.4e-93 347.4 192 93.2
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 1.2e-84 319.7 452 40.9
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 4.7e-81 307.8 411 46.7
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.2e-79 303.1 327 48.9
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 6.4e-78 297.4 451 43.5
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 1.8e-77 295.8 305 53.4
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 2.3e-75 288.9 334 43.7
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 2.5e-74 285.4 308 46.8
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 7.3e-74 283.9 194 69.6
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 1.4e-72 279.6 278 52.2
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 1.0e-67 263.5 150 87.3
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 1.3e-67 263.1 212 62.7
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 1.2e-65 256.5 386 39.9
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 1.2e-65 256.5 467 34.9
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 6.8e-64 250.8 370 40.5
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 8.9e-64 250.4 212 57.5
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.5e-63 249.6 803 28.0
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 1.6e-60 239.6 249 53.0
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 1.3e-59 236.5 125 91.2
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 6.8e-56 224.2 294 45.9
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 8.4e-54 217.2 228 52.2
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 7.1e-53 214.2 300 41.7
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 3.0e-51 208.8 282 40.8
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 9.6e-50 203.8 192 51.0
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.3e-43 182.6 134 62.7
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 3.6e-41 175.3 195 49.2
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 6.4e-38 164.5 387 33.3
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 1.9e-37 162.9 122 65.6
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 2.4e-37 162.5 191 47.6
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 7.1e-37 161.0 196 47.4
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 1.7e-30 139.8 116 55.2
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 3.2e-29 135.6 116 58.6
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 2.5e-26 125.9 116 53.4
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-18 99.0 256 28.5
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 1.4e-16 93.6 102 46.1
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 5.3e-16 91.7 100 51.0
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 2.6e-15 89.4 100 50.0
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 4.6e-12 78.6 352 23.3
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 1.3e-09 70.5 180 32.8
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 3.1e-08 65.9 61 49.2
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 2.2e-06 59.7 61 47.5
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 6.5e-06 58.2 91 40.7


User provided reference genes

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