Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 3.0e-67 258.5 137 100.0
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 1.8e-64 249.2 137 95.6
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 5.3e-64 247.7 137 94.9
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 2.0e-63 245.7 137 94.2
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 2.6e-63 245.4 135 94.8
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 9.9e-63 243.4 137 92.0
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 2.2e-62 242.3 135 94.1
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 1.9e-61 239.2 135 92.6
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 4.2e-61 238.0 133 95.5
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 4.3e-58 228.0 131 90.8
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 2.4e-56 222.2 131 87.8
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 2.0e-55 219.2 137 83.9
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 1.1e-53 213.4 124 88.7
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 1.6e-52 209.5 124 86.3
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 2.1e-52 209.1 124 87.1
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 1.3e-51 206.5 124 85.5
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 3.9e-51 204.9 135 78.5
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 3.9e-51 204.9 124 85.5
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 6.7e-51 204.1 135 78.5
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.5e-50 203.0 124 83.9
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 1.5e-50 203.0 137 78.8
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.3e-50 201.8 124 83.1
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 5.7e-50 201.1 124 83.9
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 7.4e-50 200.7 124 83.9
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 1.3e-49 199.9 135 76.3
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 1.6e-49 199.5 123 83.7
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 2.2e-49 199.1 124 83.1
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.8e-49 198.7 123 82.9
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 3.7e-49 198.4 127 79.5
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 6.3e-49 197.6 136 77.2
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 8.2e-49 197.2 123 83.7
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 8.2e-49 197.2 123 83.7
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 1.1e-48 196.8 122 82.8
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 1.1e-48 196.8 142 73.9
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 2.4e-48 195.7 128 80.5
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 2.4e-48 195.7 128 81.2
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 2.4e-48 195.7 124 79.8
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 2.4e-48 195.7 127 80.3
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 3.1e-48 195.3 123 82.1
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 6.9e-48 194.1 127 77.2
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 6.9e-48 194.1 123 80.5
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 9.0e-48 193.7 129 79.8
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 9.0e-48 193.7 124 80.6
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 1.5e-47 193.0 126 79.4
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 1.5e-47 193.0 130 75.4
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 1.5e-47 193.0 124 79.8
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 1.5e-47 193.0 125 80.0
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 2.0e-47 192.6 127 76.4
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 3.4e-47 191.8 128 79.7
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 3.4e-47 191.8 124 78.2
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 3.4e-47 191.8 124 78.2
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 3.4e-47 191.8 124 78.2
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 4.5e-47 191.4 128 79.7
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 4.5e-47 191.4 125 80.8
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 5.9e-47 191.0 124 81.5
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 7.7e-47 190.7 127 77.2
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 7.7e-47 190.7 125 80.0
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 7.7e-47 190.7 121 81.8
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.3e-46 189.9 127 76.4
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 1.3e-46 189.9 127 76.4
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 1.7e-46 189.5 124 77.4
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 1.7e-46 189.5 124 77.4
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 1.7e-46 189.5 127 76.4
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.7e-46 189.5 127 79.5
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 2.2e-46 189.1 120 80.0
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 2.2e-46 189.1 104 94.2
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 3.8e-46 188.3 127 76.4
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 3.8e-46 188.3 124 77.4
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 6.5e-46 187.6 124 76.6
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 6.5e-46 187.6 122 76.2
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 1.4e-45 186.4 122 79.5
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.9e-45 186.0 124 76.6
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 1.9e-45 186.0 127 74.8
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 2.5e-45 185.7 128 75.8
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 2.5e-45 185.7 127 74.0
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 4.2e-45 184.9 142 70.4
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 9.4e-45 183.7 124 76.6
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 9.4e-45 183.7 119 79.0
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 9.4e-45 183.7 139 72.7
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 1.2e-44 183.3 134 72.4
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 3.6e-44 181.8 124 76.6
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 3.6e-44 181.8 105 84.8
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 6.1e-44 181.0 131 74.8
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 1.0e-43 180.3 128 74.2
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 1.0e-43 180.3 124 74.2
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 1.8e-43 179.5 124 72.6
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 2.3e-43 179.1 135 75.6
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 2.3e-43 179.1 128 73.4
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 5.1e-43 177.9 124 75.8
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 6.7e-43 177.6 124 73.4
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 8.8e-43 177.2 128 73.4
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 4.3e-42 174.9 125 74.4
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 4.3e-42 174.9 123 71.5
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 5.7e-42 174.5 135 74.8
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 2.2e-41 172.6 116 73.3
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 2.8e-41 172.2 123 70.7
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 2.8e-41 172.2 165 60.0
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 6.3e-41 171.0 94 94.7
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 8.2e-41 170.6 130 71.5
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 2.4e-40 169.1 105 80.0
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 6.9e-40 167.5 124 75.0
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 2.0e-39 166.0 105 78.1
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 4.5e-39 164.9 122 67.2
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 4.5e-39 164.9 123 66.7
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.0e-38 163.7 117 67.5
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 3.8e-38 161.8 122 67.2
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 5.0e-38 161.4 127 64.6
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 6.5e-38 161.0 111 72.1
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 8.5e-38 160.6 125 68.0
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 1.1e-37 160.2 122 67.2
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 1.1e-37 160.2 124 66.9
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 1.4e-37 159.8 121 69.4
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 2.5e-37 159.1 122 69.7
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 2.5e-37 159.1 122 69.7
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 2.5e-37 159.1 122 69.7
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 3.2e-37 158.7 121 69.4
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 3.2e-37 158.7 165 55.2
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 7.2e-37 157.5 87 87.4
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 9.4e-37 157.1 87 87.4
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 1.2e-36 156.8 112 71.4
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 1.6e-36 156.4 115 67.8
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 3.6e-36 155.2 122 64.8
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 3.6e-36 155.2 121 65.3
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 6.1e-36 154.5 124 63.7
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 6.1e-36 154.5 124 63.7
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.0e-35 153.7 154 59.1
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 6.7e-35 151.0 90 80.0
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 5.7e-34 147.9 158 54.4
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 3.7e-33 145.2 124 66.1
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 2.4e-32 142.5 112 58.9
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 3.1e-32 142.1 108 61.1
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 4.1e-32 141.7 134 56.7
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 7.0e-32 141.0 114 59.6
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 7.0e-32 141.0 96 75.0
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 7.0e-32 141.0 114 58.8
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 2.0e-31 139.4 114 58.8
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 1.0e-30 137.1 122 55.7
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 3.2e-29 132.1 114 56.1
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 5.5e-29 131.3 93 72.0
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 5.5e-29 131.3 107 60.7
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 8.0e-28 127.5 80 80.0
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 1.4e-27 126.7 90 68.9
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 4.4e-26 121.7 126 59.5
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 5.7e-26 121.3 69 85.5
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 1.1e-24 117.1 78 75.6
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 3.5e-23 112.1 73 74.0
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 3.5e-23 112.1 92 63.0
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 5.9e-23 111.3 82 65.9
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 1.1e-21 107.1 105 48.6
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 1.1e-21 107.1 63 74.6
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.3e-19 99.4 99 52.5
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 8.8e-19 97.4 59 79.7
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 1.5e-18 96.7 114 41.2
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 2.8e-17 92.4 89 48.3
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 3.5e-15 85.5 52 78.8
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 5.5e-13 78.2 113 40.7
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 3.0e-11 72.4 47 76.6
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 2.0e-10 69.7 105 34.3
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.4e-10 68.9 50 68.0
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 4.5e-07 58.5 33 84.8


User provided reference genes

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