Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 1.5e-168 597.4 781 100.0
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 1.7e-114 417.9 357 80.1
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 2.6e-107 394.0 318 78.6
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 6.4e-106 389.4 253 94.5
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 5.6e-102 376.3 363 75.2
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 3.1e-100 370.5 370 78.1
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 3.1e-100 370.5 211 92.9
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 1.2e-99 368.6 211 94.3
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 1.5e-99 368.2 381 69.8
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 3.4e-99 367.1 365 71.0
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 7.1e-97 359.4 212 88.2
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 6.0e-96 356.3 369 75.9
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 1.0e-95 355.5 266 82.3
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 1.3e-95 355.1 213 86.4
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 6.6e-95 352.8 213 86.9
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 6.6e-95 352.8 213 86.4
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 1.1e-94 352.1 209 88.0
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 2.5e-94 350.9 264 76.1
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 4.3e-94 350.1 222 84.7
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 1.3e-93 348.6 210 87.1
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 1.3e-93 348.6 207 89.4
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 1.3e-93 348.6 212 85.4
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 3.6e-93 347.1 213 84.5
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 6.2e-93 346.3 213 84.5
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 6.2e-93 346.3 213 83.6
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 8.1e-93 345.9 212 84.4
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 1.1e-92 345.5 213 84.0
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 1.1e-92 345.5 212 84.4
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 1.4e-92 345.1 212 84.9
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 1.8e-92 344.7 211 82.9
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 2.4e-92 344.4 262 78.6
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 5.3e-92 343.2 213 84.0
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 1.2e-91 342.0 383 65.0
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 1.5e-91 341.7 213 83.6
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 2.0e-91 341.3 213 84.0
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.0e-91 341.3 212 83.5
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.0e-91 341.3 212 83.5
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 2.6e-91 340.9 213 83.6
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.6e-91 340.9 212 83.5
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 3.4e-91 340.5 213 83.1
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 4.5e-91 340.1 267 75.7
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 4.5e-91 340.1 212 83.5
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 7.6e-91 339.3 213 83.1
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 1.7e-90 338.2 203 87.2
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 1.7e-90 338.2 213 85.4
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 2.9e-90 337.4 366 66.7
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 2.9e-90 337.4 358 71.5
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 2.9e-90 337.4 371 62.0
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.8e-90 337.0 212 82.5
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 4.9e-90 336.7 213 81.2
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 6.4e-90 336.3 216 82.4
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 1.1e-89 335.5 214 82.7
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.4e-89 335.1 269 75.8
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 2.4e-89 334.3 214 82.7
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 3.2e-89 334.0 360 66.9
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 3.2e-89 334.0 212 81.1
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 3.2e-89 334.0 274 73.0
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 3.2e-89 334.0 213 79.3
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 4.2e-89 333.6 207 83.6
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 4.2e-89 333.6 207 83.6
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 5.4e-89 333.2 210 82.4
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 1.2e-88 332.0 208 82.2
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.6e-88 331.6 208 80.8
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 2.1e-88 331.3 214 82.2
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 2.1e-88 331.3 214 82.2
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 4.6e-88 330.1 364 69.2
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 1.0e-87 328.9 213 78.9
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 1.3e-87 328.6 213 79.8
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 1.8e-87 328.2 362 69.9
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.8e-87 328.2 363 70.0
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 2.3e-87 327.8 275 75.6
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 2.3e-87 327.8 209 82.3
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 2.3e-87 327.8 365 63.0
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 3.9e-87 327.0 209 79.4
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 1.9e-86 324.7 213 78.9
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 7.4e-86 322.8 206 81.1
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 7.4e-86 322.8 213 79.3
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 7.4e-86 322.8 357 64.1
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 2.1e-85 321.2 370 68.6
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 6.2e-85 319.7 369 62.1
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 1.4e-84 318.5 252 71.0
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 6.9e-84 316.2 196 84.7
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 4.5e-83 313.5 202 81.2
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 8.4e-82 309.3 209 77.0
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 1.4e-81 308.5 195 80.5
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 1.9e-81 308.1 209 76.6
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.2e-80 305.4 277 61.4
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.8e-79 301.6 280 58.6
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 2.3e-79 301.2 193 81.3
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 1.9e-78 298.1 363 59.5
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 3.3e-78 297.4 245 77.6
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 7.4e-78 296.2 206 74.8
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 2.1e-77 294.7 181 84.5
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 6.2e-77 293.1 180 83.9
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 1.4e-76 292.0 225 75.1
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 1.5e-75 288.5 182 81.9
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 7.1e-73 279.6 209 68.4
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 1.5e-70 271.9 200 68.5
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.1e-69 268.1 189 72.5
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 1.4e-68 265.4 198 68.7
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 5.9e-67 260.0 197 70.6
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 2.9e-66 257.7 195 66.7
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 6.1e-64 250.0 157 84.7
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 4.3e-62 243.8 187 70.6
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 1.8e-60 238.4 178 73.6
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 7.2e-57 226.5 171 70.8
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 5.7e-54 216.9 232 60.8
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.9e-42 177.9 156 59.6
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 2.1e-32 145.2 94 79.8
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 1.8e-31 142.1 115 60.9
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.2e-30 139.4 103 77.7
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 9.1e-28 129.8 201 40.8
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 3.6e-24 117.9 79 73.4
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 1.0e-23 116.3 82 76.8
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 1.4e-23 115.9 208 36.1
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 6.8e-23 113.6 64 90.6
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 2.2e-21 108.6 74 73.0
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 2.8e-21 108.2 74 68.9
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 2.3e-18 98.6 56 87.5
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.5e-17 95.1 107 49.5
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 3.3e-17 94.7 63 74.6
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 1.6e-16 92.4 67 70.1
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 2.1e-16 92.0 180 36.1
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.8e-15 89.0 118 46.6
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 2.0e-14 85.5 168 35.1
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 4.4e-14 84.3 63 68.3
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 9.8e-14 83.2 142 33.8
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 9.8e-14 83.2 142 33.8
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 1.1e-12 79.7 52 73.1
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 1.2e-11 76.3 159 35.2
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 1.1e-09 69.7 59 66.1
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 4.0e-07 61.2 34 82.4
Cfa023102 Carpinus fangiana HOM05D000298 ORTHO05D125655 6.8e-07 60.5 149 26.8
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 1.2e-06 59.7 36 75.0


User provided reference genes

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