Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 0.0e+00 1149.8 589 100.0
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 0.0e+00 1110.5 590 96.3
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 1.3e-300 1035.8 589 90.2
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 2.3e-286 988.4 617 82.7
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 4.9e-284 980.7 586 86.3
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 2.5e-280 968.4 587 84.5
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 9.6e-280 966.5 589 86.8
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 3.4e-277 958.0 585 83.9
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 1.2e-274 949.5 585 83.8
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 7.8e-274 946.8 588 82.3
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 2.2e-260 902.1 587 79.9
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 2.7e-250 868.6 586 78.2
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 6.5e-220 767.7 601 65.7
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 8.5e-220 767.3 605 66.0
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 9.4e-219 763.8 601 65.4
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 1.2e-218 763.5 601 64.9
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 1.2e-213 746.9 615 63.9
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 2.7e-213 745.7 607 64.1
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 2.9e-212 742.3 597 63.7
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 7.2e-211 737.6 608 63.7
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 4.0e-209 731.9 598 62.9
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 1.3e-207 726.9 604 63.9
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 1.6e-205 719.9 588 64.6
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 7.7e-205 717.6 598 61.7
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 2.9e-204 715.7 597 62.6
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.5e-203 712.6 594 62.0
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 4.2e-203 711.8 599 61.6
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 5.5e-203 711.4 598 62.0
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 9.8e-200 700.7 602 61.3
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 1.8e-198 696.4 632 59.8
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 7.3e-195 684.5 605 60.2
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 8.0e-194 681.0 602 58.8
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.2e-193 678.3 594 60.1
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 8.9e-193 677.6 601 60.1
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.0e-192 676.4 717 51.7
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 5.8e-192 674.9 603 59.4
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 5.8e-192 674.9 605 59.2
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 7.5e-192 674.5 599 60.1
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 6.4e-191 671.4 599 59.3
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 5.4e-190 668.3 596 58.6
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 3.5e-189 665.6 606 57.4
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 1.1e-187 660.6 529 62.6
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 1.5e-187 660.2 589 59.4
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 2.3e-185 652.9 603 58.9
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 4.4e-184 648.7 603 58.2
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 7.5e-184 647.9 597 58.0
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 3.7e-183 645.6 390 83.1
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 4.9e-183 645.2 576 60.6
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 4.9e-183 645.2 601 57.1
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 1.2e-181 640.6 600 57.7
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 1.2e-181 640.6 603 57.9
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.6e-181 640.2 624 56.1
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 2.0e-181 639.8 603 57.9
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 2.7e-181 639.4 599 57.6
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 2.7e-181 639.4 605 56.7
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 3.5e-181 639.0 599 57.4
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 2.5e-179 632.9 600 57.8
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 1.1e-177 627.5 598 56.5
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 2.3e-177 626.3 556 60.8
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 3.1e-177 625.9 607 55.5
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 3.1e-177 625.9 565 58.9
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 2.6e-176 622.9 599 56.4
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 1.7e-175 620.2 600 55.5
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 4.9e-175 618.6 593 55.6
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 4.9e-175 618.6 737 49.1
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 6.4e-175 618.2 600 55.2
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 2.4e-174 616.3 592 56.1
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 3.2e-174 615.9 611 55.8
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 3.2e-174 615.9 667 52.3
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 2.1e-173 613.2 597 54.9
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 2.7e-173 612.8 602 56.3
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 1.3e-172 610.5 594 55.7
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 6.6e-172 608.2 587 56.0
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 1.5e-171 607.1 600 56.0
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 1.9e-171 606.7 586 55.8
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 3.3e-171 605.9 587 55.5
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 4.3e-171 605.5 585 55.6
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 5.6e-171 605.1 595 56.0
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 5.6e-171 605.1 595 56.0
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 7.3e-171 604.7 601 54.9
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 2.1e-170 603.2 587 55.4
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 6.2e-170 601.7 549 59.2
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 1.1e-169 600.9 551 59.0
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 8.9e-169 597.8 582 55.5
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 7.6e-168 594.7 619 54.0
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 9.2e-166 587.8 696 49.6
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 2.7e-165 586.3 708 48.6
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 5.1e-164 582.0 576 54.5
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 6.6e-164 581.6 606 53.0
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 1.1e-163 580.9 607 54.4
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 1.2e-162 577.4 608 53.5
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 2.0e-160 570.1 604 51.3
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 3.4e-160 569.3 593 52.6
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 5.8e-160 568.5 617 52.2
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.4e-158 563.9 599 52.8
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 9.3e-158 561.2 538 57.6
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 8.7e-156 554.7 602 53.5
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 2.4e-153 546.6 611 52.2
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 2.0e-152 543.5 669 48.4
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 4.5e-152 542.3 537 55.1
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 1.1e-150 537.7 587 51.4
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 4.3e-147 525.8 485 58.4
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 1.4e-142 510.8 592 49.8
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 8.7e-140 501.5 595 50.1
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 9.0e-137 491.5 427 60.7
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 1.5e-136 490.7 604 48.7
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.0e-135 488.0 474 54.9
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 3.8e-135 486.1 406 60.8
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.5e-128 464.2 355 65.4
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 4.2e-126 456.1 608 44.2
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 7.9e-125 451.8 471 55.6
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.4e-124 451.1 453 55.8
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 8.2e-122 441.8 595 42.4
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 1.2e-120 438.0 472 51.1
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 5.9e-120 435.6 368 62.5
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 3.8e-119 433.0 601 41.8
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 5.5e-118 429.1 346 64.2
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 2.3e-116 423.7 400 57.5
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 8.8e-116 421.8 464 52.8
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 2.6e-112 410.2 553 45.6
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 8.8e-108 395.2 367 59.1
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 5.7e-99 365.9 432 50.9
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 4.8e-98 362.8 365 54.5
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.3e-98 362.1 505 45.5
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 3.2e-94 350.1 203 86.2
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.7e-93 346.3 437 47.6
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 2.6e-91 340.5 536 41.4
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 4.1e-89 333.2 605 35.2
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 2.0e-88 330.9 227 71.8
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 8.6e-87 325.5 475 44.0
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 2.5e-86 323.9 295 61.0
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 2.3e-76 290.8 511 42.1
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.2e-72 278.5 320 48.4
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.7e-72 277.3 374 45.2
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 1.1e-68 265.4 229 61.1
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 2.7e-64 250.8 197 65.0
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.3e-63 248.4 217 58.1
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 3.9e-63 246.9 315 47.0
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 2.1e-61 241.1 206 60.2
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.4e-57 227.6 187 60.4
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 3.6e-53 213.8 211 54.0
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 1.1e-52 212.2 231 48.1
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 5.8e-51 206.5 165 61.8
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-49 201.1 223 45.7
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.7e-47 194.9 364 37.9
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 2.6e-43 181.0 191 55.5
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 9.9e-43 179.1 174 55.7
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 9.9e-43 179.1 174 55.7
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.7e-42 178.3 280 41.8
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 2.1e-40 171.4 192 52.1
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 1.8e-36 158.3 117 67.5
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 1.9e-33 148.3 234 40.6
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 3.2e-33 147.5 335 32.5
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.9e-30 138.3 144 55.6
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 3.1e-28 131.0 164 49.4
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 7.6e-27 126.3 184 42.9
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 1.9e-25 121.7 128 44.5
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 5.3e-20 103.6 95 56.8
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 1.5e-19 102.1 68 77.9
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 5.8e-19 100.1 80 61.2
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 5.5e-17 93.6 181 35.9
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 9.3e-17 92.8 73 63.0
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 1.2e-16 92.4 80 56.2
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 1.2e-16 92.4 180 35.6
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 1.6e-16 92.0 597 24.3
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 6.1e-16 90.1 76 60.5
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 7.9e-16 89.7 201 36.8
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 7.9e-16 89.7 65 63.1
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 6.7e-15 86.7 118 44.1
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 7.4e-14 83.2 156 37.2
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 2.4e-12 78.2 66 59.1
CDE07G1690 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 4.1e-12 77.4 175 36.6
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 5.9e-11 73.6 58 58.6
SalBow3G0229 Salvia bowleyana HOM05D003810 ORTHO05D004416 2.2e-10 71.6 153 34.0
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 2.9e-10 71.2 56 60.7
MD08G1246200 Malus domestica HOM05D003810 ORTHO05D004416 3.2e-09 67.8 150 38.0
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 7.2e-09 66.6 52 61.5
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 7.9e-08 63.2 45 71.1
Lsat_1_v5_gn_2_75840 Lactuca sativa HOM05D001134 ORTHO05D004416 1.4e-07 62.4 115 37.4
CAN.G523.5 Capsicum annuum HOM05D000222 ORTHO05D012343 2.3e-07 61.6 63 52.4
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 2.0e-06 58.5 45 62.2
CAN.G1077.9 Capsicum annuum HOM05D000222 ORTHO05D012343 3.3e-06 57.8 159 31.4
SEGI_40538 Sequoiadendron giganteum HOM05D003810 ORTHO05D004416 7.4e-06 56.6 47 61.7


User provided reference genes

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