Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 0.0e+00 1598.2 822 100.0
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 0.0e+00 1457.2 825 91.5
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 0.0e+00 1397.5 825 86.4
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 0.0e+00 1362.4 825 85.1
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 0.0e+00 1289.2 849 80.1
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 0.0e+00 1262.7 829 78.8
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 0.0e+00 1241.1 828 79.3
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 0.0e+00 1209.5 849 75.0
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 0.0e+00 1188.7 828 76.0
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 0.0e+00 1167.1 829 75.4
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 0.0e+00 1158.3 830 74.3
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 0.0e+00 1156.7 831 73.3
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 0.0e+00 1154.0 828 74.3
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 0.0e+00 1149.8 831 72.9
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 0.0e+00 1123.6 831 74.4
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 0.0e+00 1118.2 826 70.5
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 0.0e+00 1114.8 826 70.1
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 0.0e+00 1099.3 847 69.5
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 0.0e+00 1093.2 826 69.1
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 0.0e+00 1087.8 837 69.7
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 0.0e+00 1079.7 835 68.5
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 0.0e+00 1075.8 826 68.9
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 6.7e-311 1070.5 845 70.4
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.6e-309 1065.8 826 69.0
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.7e-307 1057.4 826 68.0
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 7.5e-307 1057.0 836 67.7
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 1.3e-303 1046.2 835 67.7
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 2.3e-303 1045.4 835 67.7
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.3e-303 1045.4 818 68.1
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 4.3e-302 1041.2 851 68.2
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 5.6e-302 1040.8 829 69.2
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 1.6e-301 1039.3 843 67.1
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.6e-301 1038.1 826 66.5
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 8.9e-300 1033.5 833 66.5
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.4e-299 1031.6 826 66.3
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.2e-298 1028.9 819 66.8
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 4.9e-298 1027.7 827 65.8
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 1.1e-297 1026.5 831 66.5
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 1.9e-297 1025.8 827 65.1
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 2.3e-295 1018.8 863 63.7
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 6.6e-295 1017.3 826 66.3
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.1e-294 1016.5 832 65.0
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 1.5e-294 1016.1 827 65.2
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 4.3e-294 1014.6 833 64.9
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 2.4e-289 998.8 823 67.4
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.7e-288 995.3 835 65.4
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 6.6e-287 990.7 834 63.5
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 2.1e-280 969.1 804 65.5
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 5.1e-279 964.5 737 69.2
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 5.6e-278 961.1 733 70.4
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 2.6e-275 952.2 789 65.9
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 8.4e-266 920.6 830 61.1
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 3.5e-264 915.2 827 60.9
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 8.7e-263 910.6 830 61.3
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 2.2e-258 896.0 839 59.0
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 3.8e-258 895.2 839 58.9
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 1.6e-253 879.8 571 80.6
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.2e-251 873.6 847 59.3
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 1.0e-250 870.5 887 54.8
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.4e-249 866.7 878 56.6
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.2e-248 863.6 835 58.8
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 3.8e-242 842.0 834 58.9
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 1.1e-241 840.5 892 54.9
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 7.9e-240 834.3 840 56.9
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 1.3e-239 833.6 992 51.9
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 1.5e-238 830.1 819 57.0
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 2.2e-237 826.2 860 55.2
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 2.0e-235 819.7 820 57.2
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 4.5e-235 818.5 940 52.7
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 3.8e-234 815.5 698 65.0
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 1.4e-233 813.5 837 58.4
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 1.6e-232 810.1 846 55.7
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 5.1e-231 805.1 939 52.4
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 8.8e-231 804.3 936 51.7
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 1.2e-224 783.9 837 54.8
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 4.7e-224 781.9 947 50.9
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 2.3e-223 779.6 848 53.7
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 2.8e-221 772.7 942 50.3
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.4e-220 770.4 837 54.5
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 2.5e-217 759.6 771 56.9
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 2.3e-215 753.1 825 54.5
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 2.0e-214 750.0 831 53.2
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 4.4e-214 748.8 556 70.1
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 5.7e-214 748.4 949 49.7
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 5.9e-211 738.4 1056 46.6
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 7.7e-211 738.0 830 52.2
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 2.7e-208 729.6 845 52.3
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 3.6e-208 729.2 830 51.0
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 3.6e-208 729.2 839 52.7
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 1.4e-207 727.2 935 49.1
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 5.2e-207 725.3 830 51.0
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 6.8e-207 724.9 929 49.1
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 6.8e-207 724.9 944 48.6
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 4.8e-205 718.8 933 48.7
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 1.6e-203 713.8 927 49.9
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.0e-202 711.1 840 51.5
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 1.3e-202 710.7 475 76.8
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 5.0e-202 708.8 799 52.7
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 2.5e-201 706.4 927 49.7
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 1.4e-199 700.7 817 51.3
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.5e-198 697.2 645 60.8
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 3.3e-193 679.5 852 51.9
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 6.1e-192 675.2 822 51.5
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 1.0e-191 674.5 834 49.6
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 1.2e-190 671.0 816 50.1
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 7.5e-190 668.3 836 50.0
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 6.0e-171 605.5 678 51.6
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 1.5e-169 600.9 431 70.5
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 2.5e-169 600.1 372 79.0
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 5.8e-166 589.0 370 78.4
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 9.9e-166 588.2 1100 40.6
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 3.9e-162 576.2 358 78.8
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 7.3e-161 572.0 368 76.9
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 6.9e-159 565.5 802 45.5
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 9.3e-148 528.5 421 64.6
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 2.8e-144 516.9 375 69.6
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 5.3e-143 512.7 603 52.1
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 1.2e-142 511.5 359 70.2
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 3.4e-142 510.0 464 59.9
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 8.4e-141 505.4 395 66.1
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 4.2e-140 503.1 426 64.1
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 8.7e-138 495.4 369 67.2
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.4e-135 488.0 539 51.2
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 3.1e-135 486.9 687 45.6
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 2.1e-131 474.2 465 57.4
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 2.7e-131 473.8 438 58.7
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 1.3e-130 471.5 328 72.3
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 9.7e-129 465.3 295 75.3
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 2.2e-128 464.2 376 61.4
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 1.4e-124 451.4 387 62.0
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 4.1e-119 433.3 275 76.7
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.2e-118 431.8 447 52.3
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 4.2e-116 423.3 690 40.3
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 2.1e-115 421.0 462 51.3
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 5.1e-114 416.4 453 51.4
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 2.5e-108 397.5 577 43.2
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.2e-107 395.2 447 47.4
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 3.5e-102 377.1 480 46.9
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 5.0e-101 373.2 417 50.4
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 5.5e-100 369.8 441 49.7
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 7.2e-100 369.4 364 56.9
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.6e-99 367.1 258 75.2
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 2.6e-97 360.9 464 48.5
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.7e-96 358.2 621 39.8
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 4.8e-96 356.7 464 48.3
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.1e-95 354.0 351 56.4
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 2.7e-94 350.9 332 56.0
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.2e-88 331.3 479 48.4
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 1.0e-85 322.4 582 45.2
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.8e-83 314.3 188 80.3
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 5.4e-79 300.1 415 45.8
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.3e-77 295.4 268 59.0
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 4.3e-76 290.4 413 40.0
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 9.8e-73 279.3 195 69.2
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.0e-70 271.6 182 72.5
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.5e-68 265.4 469 42.9
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 2.1e-62 245.0 215 62.8
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 8.1e-59 233.0 470 38.7
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 3.1e-58 231.1 175 65.1
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 1.2e-57 229.2 438 34.9
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 1.5e-57 228.8 309 40.1
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 8.3e-56 223.0 152 73.7
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 4.6e-54 217.2 201 59.7
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 2.4e-47 194.9 101 90.1
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 3.3e-44 184.5 148 61.5
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 2.6e-41 174.9 331 36.3
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 2.1e-38 165.2 86 87.2
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.2e-33 149.4 620 28.1
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 1.4e-23 115.9 65 84.6
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 1.6e-22 112.5 63 81.0
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 1.1e-20 106.3 120 50.8
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.3e-19 102.8 126 49.2
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 1.3e-19 102.8 65 73.8
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.6e-19 102.4 53 90.6
Ca_09910_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 1.7e-16 92.4 80 67.5
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 4.6e-14 84.3 60 70.0
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 2.2e-11 75.5 50 74.0
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.5e-09 67.8 39 82.1
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 5.9e-09 67.4 32 87.5
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 8.5e-08 63.5 46 67.4
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 5.5e-07 60.8 56 57.1
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 3.6e-06 58.2 73 47.9
arahy.Tifrunner.gnm1.ann1.0536J9 Arachis hypogaea HOM05D000340 ORTHO05D000677 7.9e-06 57.0 38 71.1


User provided reference genes

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