Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 4.7e-100 367.9 183 100.0
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 3.0e-99 365.2 183 98.4
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 3.0e-99 365.2 183 98.4
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 1.7e-97 359.4 183 97.8
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 3.8e-94 348.2 183 94.0
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 3.8e-94 348.2 183 94.0
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 3.6e-92 341.7 183 92.3
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 3.6e-92 341.7 183 92.3
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 3.0e-91 338.6 183 89.6
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 5.2e-91 337.8 183 89.1
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 5.2e-91 337.8 183 89.6
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 8.8e-91 337.0 183 89.6
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 8.8e-91 337.0 183 91.3
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 1.5e-90 336.3 183 90.2
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 2.6e-90 335.5 183 89.6
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 3.4e-90 335.1 183 88.0
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.4e-90 335.1 183 88.0
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 9.8e-90 333.6 183 88.5
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 1.3e-89 333.2 183 88.5
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 1.7e-89 332.8 183 87.4
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 1.7e-89 332.8 183 88.5
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 1.7e-89 332.8 183 88.0
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.2e-89 332.4 183 88.0
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 2.8e-89 332.0 183 87.4
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 4.8e-89 331.3 182 88.5
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 8.3e-89 330.5 183 86.9
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.1e-88 330.1 183 88.5
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.1e-88 330.1 183 86.9
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 1.4e-88 329.7 183 85.8
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 1.4e-88 329.7 183 86.9
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 1.8e-88 329.3 183 86.3
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 3.1e-88 328.6 183 86.3
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 4.1e-88 328.2 181 86.2
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 4.1e-88 328.2 183 88.0
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 5.4e-88 327.8 183 88.0
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 5.4e-88 327.8 182 87.4
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 7.0e-88 327.4 183 86.9
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 7.0e-88 327.4 183 86.9
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 87.4
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 86.3
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 2.0e-87 325.9 183 86.3
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 3.5e-87 325.1 183 86.9
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 3.5e-87 325.1 183 86.3
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 86.3
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 1.0e-86 323.6 182 85.7
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 1.3e-86 323.2 183 84.7
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 2.3e-86 322.4 181 85.6
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 2.9e-86 322.0 183 84.7
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.9e-86 322.0 183 84.7
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.9e-86 322.0 183 84.7
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 3.8e-86 321.6 183 84.7
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 5.0e-86 321.2 183 84.7
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 6.5e-86 320.9 183 84.7
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 6.5e-86 320.9 183 84.7
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 6.5e-86 320.9 183 84.7
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 6.5e-86 320.9 181 86.2
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 1.5e-85 319.7 183 84.7
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 1.9e-85 319.3 182 84.6
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 2.5e-85 318.9 181 84.0
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 84.2
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 3.3e-85 318.5 183 83.6
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 3.3e-85 318.5 183 83.1
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 3.3e-85 318.5 183 83.1
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 3.3e-85 318.5 183 83.6
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 3.3e-85 318.5 181 84.0
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 83.6
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 82.5
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 82.5
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 5.5e-85 317.8 183 83.6
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 84.2
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 7.2e-85 317.4 181 83.4
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 84.2
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 9.5e-85 317.0 181 84.5
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 9.5e-85 317.0 181 84.5
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 9.5e-85 317.0 181 84.5
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 9.5e-85 317.0 181 82.9
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 9.5e-85 317.0 181 84.5
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 9.5e-85 317.0 181 84.5
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 82.5
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 1.2e-84 316.6 181 83.4
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 83.6
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 1.6e-84 316.2 182 83.5
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 4.7e-84 314.7 181 82.3
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 8.0e-84 313.9 181 83.4
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 1.4e-83 313.2 183 82.5
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.4e-83 313.2 183 82.0
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.8e-83 312.8 183 81.4
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 3.0e-83 312.0 181 84.0
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 3.0e-83 312.0 181 83.4
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 4.0e-83 311.6 181 82.9
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 5.2e-83 311.2 190 80.5
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 6.8e-83 310.8 181 82.3
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 81.4
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 1.5e-82 309.7 183 82.0
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 82.0
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 82.5
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 5.7e-82 307.8 181 82.3
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 79.8
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.3e-81 306.6 183 82.0
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 1.3e-81 306.6 184 81.0
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 2.8e-81 305.4 181 81.8
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 4.9e-81 304.7 181 81.2
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 4.9e-81 304.7 184 80.4
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 2.4e-80 302.4 184 81.0
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 7.0e-80 300.8 184 78.8
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 1.7e-78 296.2 183 77.0
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.7e-78 296.2 155 91.0
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 2.3e-78 295.8 184 77.7
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 5.0e-78 294.7 183 76.5
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 6.6e-78 294.3 182 79.7
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 8.6e-78 293.9 183 76.5
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 5.6e-77 291.2 228 65.8
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 7.3e-77 290.8 183 72.7
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 2.8e-76 288.9 152 93.4
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 1.0e-75 287.0 183 75.4
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 3.4e-74 282.0 183 72.7
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 2.9e-73 278.9 185 73.5
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 6.4e-73 277.7 183 77.6
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 1.8e-72 276.2 183 69.4
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 2.4e-72 275.8 219 64.4
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 2.4e-72 275.8 182 72.0
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 3.2e-72 275.4 184 70.7
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 3.5e-71 271.9 152 84.2
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.9e-70 268.5 155 83.9
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 1.6e-68 263.1 183 72.1
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 4.0e-67 258.5 181 67.4
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 3.7e-65 251.9 188 71.3
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 7.0e-64 247.7 181 69.1
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 1.2e-63 246.9 181 70.2
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 2.7e-63 245.7 138 84.8
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 1.1e-59 233.8 183 66.1
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 1.7e-57 226.5 138 76.8
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 2.7e-55 219.2 183 62.8
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 3.5e-55 218.8 155 70.3
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.0e-54 215.7 179 64.8
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 6.6e-54 214.5 158 66.5
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 2.5e-53 212.6 174 62.6
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.1e-51 207.2 152 65.1
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 4.9e-49 198.4 149 66.4
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 2.3e-46 189.5 102 90.2
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 3.0e-46 189.1 158 61.4
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 1.5e-45 186.8 186 50.5
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 7.3e-45 184.5 102 86.3
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 9.0e-43 177.6 106 77.4
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.4e-42 175.6 100 85.0
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 3.4e-42 175.6 100 82.0
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 4.4e-42 175.3 99 83.8
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 2.9e-41 172.6 146 57.5
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 5.1e-38 161.8 134 62.7
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 1.4e-35 153.7 99 71.7
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.2e-34 150.6 105 67.6
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 8.4e-33 144.4 81 84.0
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 3.0e-30 136.0 78 84.6
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.5e-29 133.7 81 79.0
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.0e-26 123.2 101 60.4
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 1.3e-25 120.6 106 60.4
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 1.3e-20 104.0 106 54.7
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 2.8e-20 102.8 68 66.2
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.2e-18 97.4 52 90.4
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 1.2e-15 87.4 187 36.9
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 1.9e-08 63.5 181 31.5
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 1.6e-07 60.5 81 44.4
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 3.6e-07 59.3 37 67.6
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 7.9e-07 58.2 98 34.7
MCO09G009 Micromonas commoda HOM05D001645 ORTHO05D001749 1.4e-06 57.4 140 25.0
Migut.E00104 Erythranthe guttata HOM05D001645 ORTHO05D001749 3.9e-06 55.8 105 31.4
CAN.G1207.11 Capsicum annuum HOM05D001645 ORTHO05D001749 5.1e-06 55.5 124 29.8
Cc07_g03270 Coffea canephora HOM05D001645 ORTHO05D001749 6.7e-06 55.1 124 29.8
Nitab4.5_0000141g0280 Nicotiana tabacum HOM05D001645 ORTHO05D001749 6.7e-06 55.1 105 30.5
Nitab4.5_0003566g0020 Nicotiana tabacum HOM05D001645 ORTHO05D001749 6.7e-06 55.1 105 30.5
Nitab4.5_0004485g0010 Nicotiana tabacum HOM05D001645 ORTHO05D001749 6.7e-06 55.1 105 30.5
GSVIVG01020020001 Vitis vinifera HOM05D001645 ORTHO05D001749 6.7e-06 55.1 127 28.3
MSTRG.3325 Avicennia marina HOM05D001645 ORTHO05D001749 8.8e-06 54.7 97 33.0
FvH4_5g15210 Fragaria vesca HOM05D001645 ORTHO05D001749 8.8e-06 54.7 113 30.1
FAN08G3277 Fragaria x ananassa HOM05D001645 ORTHO05D001749 8.8e-06 54.7 113 30.1
FAN13G0214 Fragaria x ananassa HOM05D001645 ORTHO05D001749 8.8e-06 54.7 113 30.1
FAN18G1251 Fragaria x ananassa HOM05D001645 ORTHO05D001749 8.8e-06 54.7 113 30.1
Peaxi162Scf00026g03012 Petunia axillaris HOM05D001645 ORTHO05D001749 8.8e-06 54.7 97 32.0
RcHm_v2.0_Chr7g0180961 Rosa chinensis HOM05D001645 ORTHO05D001749 8.8e-06 54.7 113 30.1
SMO268G0058 Selaginella moellendorffii HOM05D001645 ORTHO05D001749 8.8e-06 54.7 117 30.8
TPR.G11849 Trifolium pratense HOM05D001645 ORTHO05D001749 8.8e-06 54.7 119 31.1


User provided reference genes

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