Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 0.0e+00 1174.1 602 100.0
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 0.0e+00 1089.7 598 93.1
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 1.4e-310 1068.9 603 90.7
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 1.2e-298 1029.2 604 87.6
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 6.5e-284 980.3 604 83.9
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 1.8e-281 972.2 605 83.0
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 2.0e-280 968.8 605 82.8
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 1.7e-276 955.7 611 81.2
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 4.7e-274 947.6 611 80.5
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 2.6e-272 941.8 608 79.8
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 7.5e-272 940.3 605 80.0
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 7.0e-270 933.7 600 81.5
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 4.1e-262 907.9 605 76.5
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 2.1e-234 815.8 604 69.9
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.4e-230 803.1 609 67.8
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 3.2e-230 802.0 606 70.8
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 1.0e-228 797.0 602 67.8
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 1.3e-228 796.6 603 68.0
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 2.3e-228 795.8 611 67.6
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 3.9e-228 795.0 606 67.7
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 2.5e-227 792.3 606 66.5
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 5.6e-227 791.2 604 68.0
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 3.6e-226 788.5 604 65.7
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 1.1e-225 786.9 605 66.1
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 3.1e-225 785.4 602 66.6
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 5.3e-225 784.6 601 66.4
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.2e-224 783.5 604 65.9
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 4.5e-224 781.6 599 65.6
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 2.2e-223 779.2 598 65.4
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 3.8e-223 778.5 599 65.6
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 5.5e-222 774.6 607 64.6
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 7.1e-222 774.2 604 67.4
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 9.3e-222 773.9 602 64.5
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 6.0e-221 771.2 599 66.9
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 1.5e-219 766.5 604 65.1
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 7.4e-219 764.2 605 64.8
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 4.8e-218 761.5 607 64.6
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 8.1e-218 760.8 599 64.9
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 8.1e-218 760.8 598 65.7
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 8.1e-218 760.8 604 63.9
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 1.1e-217 760.4 604 64.7
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 1.1e-217 760.4 606 64.0
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 1.4e-217 760.0 607 64.1
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 2.4e-217 759.2 620 63.7
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 1.2e-216 756.9 603 64.0
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 7.6e-216 754.2 603 65.7
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 1.7e-215 753.1 598 64.0
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 2.9e-215 752.3 608 65.0
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 3.8e-215 751.9 640 61.2
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 6.5e-215 751.1 606 63.2
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.4e-214 750.0 599 63.8
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 1.9e-214 749.6 580 66.4
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 7.1e-214 747.7 619 62.5
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 2.7e-213 745.7 606 63.9
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 4.6e-213 745.0 603 62.4
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 8.7e-212 740.7 610 63.6
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 7.4e-211 737.6 596 62.9
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 1.3e-210 736.9 609 63.7
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 4.8e-210 734.9 607 63.6
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.1e-209 733.8 596 63.4
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 1.4e-209 733.4 599 63.3
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 2.4e-209 732.6 596 63.6
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 2.4e-209 732.6 596 63.4
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 2.4e-209 732.6 635 61.7
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 2.4e-209 732.6 610 61.6
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 4.1e-209 731.9 605 63.3
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 5.3e-209 731.5 598 62.5
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 5.3e-209 731.5 598 63.0
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 1.5e-208 729.9 600 63.5
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 1.5e-208 729.9 603 61.0
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 3.4e-208 728.8 600 63.2
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 3.4e-208 728.8 620 60.6
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 7.6e-208 727.6 597 61.6
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 7.6e-208 727.6 596 62.8
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 1.0e-207 727.2 606 61.7
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 1.0e-207 727.2 597 63.3
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 6.5e-207 724.5 600 61.5
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 1.1e-206 723.8 465 81.1
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.4e-206 723.4 604 62.9
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 3.2e-206 722.2 597 63.8
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 1.6e-205 719.9 601 62.2
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 2.7e-205 719.2 597 63.7
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 7.9e-205 717.6 600 62.5
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.0e-204 717.2 604 62.6
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 3.0e-204 715.7 602 60.6
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 3.9e-204 715.3 600 62.3
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 1.1e-203 713.8 603 62.2
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 1.9e-203 713.0 568 63.7
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 1.3e-202 710.3 599 59.4
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.1e-201 705.7 588 60.5
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 5.3e-201 704.9 605 61.0
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 6.9e-201 704.5 599 60.9
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 1.0e-199 700.7 541 66.5
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 1.0e-199 700.7 616 59.4
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 1.0e-199 700.7 582 63.4
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 4.2e-198 695.3 601 59.4
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 5.5e-198 694.9 604 59.3
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 7.9e-197 691.0 553 63.8
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 6.7e-196 688.0 611 59.1
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 8.8e-196 687.6 600 58.3
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 8.8e-196 687.6 599 60.9
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 3.3e-195 685.6 599 60.8
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.3e-191 673.7 619 56.9
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 2.2e-191 672.9 606 60.1
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 3.2e-190 669.1 600 57.8
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.0e-188 664.1 600 58.0
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 6.7e-188 661.4 607 59.0
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 2.6e-187 659.4 607 58.8
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.6e-187 659.4 607 58.8
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.6e-187 659.4 607 58.6
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.7e-186 656.8 595 59.5
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 2.4e-185 652.9 603 56.6
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 7.0e-185 651.4 607 58.3
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 9.1e-185 651.0 606 57.4
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 1.6e-181 640.2 523 63.7
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 8.8e-180 634.4 605 56.5
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 3.7e-178 629.0 607 56.0
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 3.5e-176 622.5 596 57.0
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 2.2e-175 619.8 587 55.5
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 7.7e-160 568.2 607 51.1
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 5.0e-159 565.5 588 50.9
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 4.7e-157 558.9 519 61.5
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 1.4e-153 547.4 626 48.7
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 5.4e-153 545.4 358 81.3
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.0e-148 531.2 600 50.7
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 6.8e-140 501.9 605 47.3
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 4.7e-133 479.2 443 56.4
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 3.2e-129 466.5 619 44.6
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 2.0e-123 447.2 396 61.1
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 5.8e-115 419.1 626 39.6
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 8.4e-114 415.2 323 65.6
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 5.6e-110 402.5 457 46.0
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.8e-109 400.2 320 64.7
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 1.0e-98 365.2 615 38.4
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 7.6e-91 339.0 357 53.2
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 1.2e-83 315.1 267 61.8
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 1.6e-80 304.7 198 74.2
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 2.0e-75 287.7 621 33.0
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 6.5e-66 256.1 642 32.6
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 4.2e-65 253.4 183 70.5
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 1.0e-63 248.8 219 58.9
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 3.6e-56 223.8 162 66.7
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.2e-53 214.5 137 70.1
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.3e-47 194.5 183 63.4
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 2.6e-46 191.0 376 38.0
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 2.0e-35 154.8 130 61.5
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 6.6e-34 149.8 181 55.2
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 5.6e-33 146.7 118 62.7
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 5.8e-30 136.7 97 71.1
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 7.5e-30 136.3 101 64.4
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 9.8e-30 136.0 101 64.4
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 1.4e-28 132.1 133 56.4
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 6.0e-27 126.7 113 58.4
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 7.8e-27 126.3 113 58.4
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 1.9e-25 121.7 76 71.1
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 3.1e-23 114.4 207 40.6
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 1.9e-20 105.1 82 63.4
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 5.4e-20 103.6 56 85.7
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 3.5e-19 100.9 114 49.1
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 3.9e-18 97.4 132 47.0
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 5.6e-17 93.6 147 43.5
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 1.5e-14 85.5 107 52.3
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 4.1e-12 77.4 77 55.8
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 5.1e-10 70.5 34 97.1


User provided reference genes

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