Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 2237.6 1130 100.0
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 2067.0 1129 91.9
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1921.0 1131 85.6
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1820.8 1135 80.4
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1795.4 1128 80.2
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1793.9 1128 80.1
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1788.5 1130 79.6
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1777.3 1135 78.5
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1770.4 1128 79.4
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1761.9 1135 78.2
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1548.9 1130 68.7
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1536.5 1131 68.1
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1531.2 1130 68.1
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1522.3 1123 68.9
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1521.9 1133 66.9
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1511.5 1127 66.4
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 1510.7 1127 66.4
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1509.2 1132 66.3
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1508.8 1127 66.3
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1506.1 1127 66.0
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1504.6 1133 66.6
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1504.2 1133 66.5
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1501.5 1130 67.4
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1496.9 1127 65.7
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1495.7 1137 66.6
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1494.6 1138 66.2
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1493.8 1094 69.5
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1491.5 1138 66.8
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1490.3 1130 66.1
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1489.6 1136 66.4
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 1481.8 1130 65.8
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1479.5 1099 68.4
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1478.4 1137 65.7
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1477.6 1129 66.0
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1475.3 1136 65.6
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1469.5 1133 65.4
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1461.0 1137 65.0
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1460.3 1137 65.3
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1459.5 1136 64.3
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1457.6 1138 65.7
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1454.5 1132 64.9
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1452.2 1136 64.0
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1434.9 1130 64.2
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1434.1 1133 63.8
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1432.5 1126 64.4
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1421.8 1132 63.4
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1414.8 1128 62.8
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1407.1 1132 62.8
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1405.6 1132 62.6
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1405.6 1130 63.2
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1404.8 1132 62.5
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1403.3 1146 61.5
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1401.0 1126 62.2
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1393.6 1132 61.7
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1391.3 1132 61.8
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1389.8 1142 62.4
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1389.4 1127 61.8
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1388.2 1132 61.8
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1384.0 1147 61.9
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1382.5 1136 62.1
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1380.2 1142 62.4
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1380.2 1091 64.3
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1377.5 1108 62.5
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1369.4 1133 61.0
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1367.8 1144 62.0
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1365.1 1137 61.4
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1364.4 1131 62.3
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1353.6 1121 61.6
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1344.3 1134 59.6
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1327.4 1136 59.6
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1327.4 1136 59.6
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1325.5 1134 59.9
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1321.2 1133 59.6
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1319.3 1137 59.7
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1318.5 1136 59.2
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1317.0 1126 61.2
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1314.7 1131 60.6
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1313.5 1134 59.3
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1306.6 1134 59.5
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1305.4 1134 59.3
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1305.4 1134 59.2
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1286.6 1133 58.1
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1276.5 1166 56.4
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1275.0 1127 59.4
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1269.6 1135 57.9
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1269.2 1103 58.7
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1261.9 1130 57.9
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1241.1 996 62.0
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1203.7 1135 54.4
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1189.9 1146 53.8
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1179.1 1093 58.6
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1149.8 1316 49.5
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1117.4 1116 53.0
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1114.4 1148 50.9
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1100.5 862 65.4
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 2.8e-304 1048.9 1130 51.6
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.7e-296 1023.1 755 68.9
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 1.8e-287 993.0 753 64.9
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 3.8e-285 985.3 1130 49.1
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 3.0e-274 949.1 1049 48.3
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 2.8e-256 889.4 712 62.2
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 4.6e-222 775.8 1132 40.9
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 8.1e-219 765.0 1158 38.5
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 1.7e-208 730.7 1164 38.4
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 3.5e-206 723.0 807 50.3
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 5.1e-197 692.6 1099 38.4
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 3.9e-173 613.2 648 48.1
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 1.5e-135 488.4 356 71.1
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 8.3e-131 472.6 1338 29.2
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 1.7e-128 464.9 459 53.8
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 1.2e-100 372.5 321 60.7
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 2.1e-73 282.0 1213 26.1
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 1.0e-72 279.6 184 72.3
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 1.0e-72 279.6 208 67.3
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 4.3e-71 274.2 230 61.7
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 7.4e-71 273.5 250 53.2
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 4.5e-68 264.2 196 73.0
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 2.5e-66 258.5 714 31.0
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 1.8e-53 215.7 1071 25.1
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 7.0e-53 213.8 167 70.1
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 9.1e-53 213.4 293 50.5
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 2.9e-51 208.4 166 68.1
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 1.4e-45 189.5 131 75.6
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 2.0e-36 159.1 147 59.2
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 1.5e-34 152.9 1193 24.2
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 9.2e-29 133.7 136 52.2


User provided reference genes

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