Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 2.2e-113 412.5 242 100.0
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 5.4e-112 407.9 242 99.2
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 2.9e-105 385.6 244 94.3
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 1.3e-102 376.7 243 90.9
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 2.8e-100 369.0 243 88.1
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 3.6e-100 368.6 242 91.7
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 1.2e-98 363.6 243 89.3
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 1.3e-97 360.1 245 79.2
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 1.2e-95 353.6 205 90.7
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 4.6e-95 351.7 209 90.0
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 7.3e-93 344.4 241 81.3
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 1.2e-92 343.6 241 85.9
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 1.2e-92 343.6 241 85.9
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 1.6e-92 343.2 241 85.9
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 2.1e-92 342.8 238 75.2
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 4.7e-92 341.7 241 83.0
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 4.7e-92 341.7 241 80.9
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 1.1e-91 340.5 241 83.0
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 1.4e-91 340.1 240 77.1
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 1.4e-91 340.1 241 73.4
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 3.1e-91 339.0 205 84.9
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 5.2e-91 338.2 236 75.0
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 5.2e-91 338.2 241 80.5
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.2e-90 337.0 241 82.2
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 3.4e-90 335.5 241 82.2
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 4.4e-90 335.1 234 85.0
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.7e-89 333.2 241 80.5
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 1.7e-89 333.2 205 83.9
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 1.7e-89 333.2 205 82.0
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 2.2e-89 332.8 241 74.3
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 3.8e-89 332.0 206 82.0
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 4.9e-89 331.6 241 79.7
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 4.9e-89 331.6 206 82.5
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 6.4e-89 331.3 206 82.0
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 8.4e-89 330.9 238 79.8
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 8.4e-89 330.9 241 79.7
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.4e-88 330.1 242 72.3
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 1.9e-88 329.7 241 80.9
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.9e-88 329.7 206 80.6
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 2.4e-88 329.3 238 73.5
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 3.2e-88 328.9 202 83.7
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 5.4e-88 328.2 241 73.0
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 5.4e-88 328.2 238 73.5
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 9.3e-88 327.4 238 73.1
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 1.2e-87 327.0 236 78.4
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.1e-87 326.2 242 75.6
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 2.7e-87 325.9 242 72.7
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.7e-87 325.9 242 72.3
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.7e-87 325.9 207 81.6
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 3.5e-87 325.5 242 76.0
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 3.5e-87 325.5 241 79.7
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 6.0e-87 324.7 242 74.8
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.0e-86 323.9 242 72.3
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 1.3e-86 323.6 242 75.6
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.3e-86 323.6 242 74.4
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 1.7e-86 323.2 227 80.2
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.3e-86 322.8 242 72.3
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 5.1e-86 321.6 242 74.4
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 6.6e-86 321.2 240 78.8
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 8.7e-86 320.9 241 69.3
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 7.3e-85 317.8 227 82.4
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 7.3e-85 317.8 238 78.2
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 2.1e-84 316.2 238 73.1
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.1e-84 316.2 242 76.4
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 2.8e-84 315.8 202 80.2
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 3.6e-84 315.5 239 73.6
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 6.2e-84 314.7 203 77.8
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 6.2e-84 314.7 241 77.2
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 1.4e-83 313.5 242 71.1
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 2.4e-83 312.8 244 77.0
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 2.4e-83 312.8 202 79.7
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 5.3e-83 311.6 196 81.1
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 5.3e-83 311.6 241 75.9
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 5.3e-83 311.6 248 70.2
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 6.9e-83 311.2 245 67.3
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 9.0e-83 310.8 206 76.2
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 2.6e-82 309.3 193 81.9
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 3.4e-82 308.9 201 77.6
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 5.8e-82 308.1 239 72.4
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 5.8e-82 308.1 197 79.2
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 5.8e-82 308.1 242 70.2
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 7.6e-82 307.8 203 76.8
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 9.9e-82 307.4 200 79.0
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 1.3e-81 307.0 238 77.3
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 1.3e-81 307.0 238 66.8
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.3e-81 307.0 239 70.7
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.2e-81 306.2 239 71.5
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 2.2e-81 306.2 241 75.1
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 2.9e-81 305.8 238 75.2
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 6.4e-81 304.7 199 78.9
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.1e-80 303.9 242 72.3
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 4.2e-80 302.0 192 79.2
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 5.4e-80 301.6 203 76.4
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 9.3e-80 300.8 205 75.6
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.1e-79 299.7 234 69.7
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 2.1e-79 299.7 209 83.3
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 3.5e-79 298.9 201 78.1
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 6.0e-79 298.1 201 77.6
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 1.3e-78 297.0 241 73.9
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 2.3e-78 296.2 238 66.4
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 3.0e-78 295.8 237 65.8
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.0e-78 295.8 229 72.5
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.9e-78 295.4 238 67.2
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.1e-77 293.9 205 75.1
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.9e-77 293.1 205 74.6
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 1.9e-77 293.1 205 75.1
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.3e-77 292.4 238 68.1
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 9.6e-77 290.8 205 75.1
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 1.6e-76 290.0 205 75.1
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 2.1e-76 289.7 206 72.3
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 3.6e-76 288.9 205 73.7
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 4.0e-75 285.4 205 72.7
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 4.0e-75 285.4 205 72.7
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 2.0e-74 283.1 205 69.3
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 2.0e-74 283.1 205 72.2
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 2.0e-74 283.1 205 72.2
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 3.4e-74 282.3 183 78.1
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 1.3e-73 280.4 203 71.9
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 6.4e-73 278.1 206 68.9
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 5.4e-72 275.0 206 69.9
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.3e-69 265.8 178 74.7
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 1.1e-67 260.8 203 64.0
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 5.3e-67 258.5 192 67.7
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 6.9e-67 258.1 192 69.8
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 1.1e-61 240.7 192 62.5
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 2.4e-59 233.0 151 78.8
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 9.0e-59 231.1 206 64.6
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 2.9e-57 226.1 191 62.8
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 2.1e-55 219.9 205 60.0
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 5.0e-49 198.7 134 77.6
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 4.6e-47 192.2 133 74.4
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 2.4e-43 179.9 111 80.2
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 1.5e-42 177.2 206 55.3
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 4.5e-42 175.6 105 84.8
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 2.7e-39 166.4 176 50.6
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 2.2e-36 156.8 173 48.0
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 5.2e-30 135.6 185 41.1
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 2.4e-27 126.7 92 69.6
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 2.7e-26 123.2 86 68.6
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 3.1e-19 99.8 182 34.6
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 3.5e-18 96.3 90 72.2
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 8.5e-17 91.7 54 83.3
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 3.0e-14 83.2 56 75.0
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 1.5e-13 80.9 211 28.4
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 2.8e-07 60.1 49 65.3


User provided reference genes

Program Settings