Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 0.0e+00 1187.6 602 100.0
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 0.0e+00 1148.7 602 95.3
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 0.0e+00 1120.9 602 92.7
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 0.0e+00 1075.1 603 89.6
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.4e-310 1068.1 606 88.4
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.4e-310 1068.1 606 88.4
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 7.7e-309 1063.1 603 88.1
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 6.5e-308 1060.1 605 87.4
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 5.5e-307 1057.0 609 87.2
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 5.3e-302 1040.4 609 84.6
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 3.3e-296 1021.1 589 84.7
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.1e-294 1016.1 615 82.6
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 2.2e-292 1008.4 614 83.9
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 5.0e-292 1007.3 617 81.5
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 2.5e-291 1005.0 607 81.7
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 4.2e-291 1004.2 614 81.4
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 5.5e-291 1003.8 566 85.5
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.2e-290 1002.7 608 82.7
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.6e-290 1002.3 607 82.4
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 2.1e-290 1001.9 609 82.3
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 3.6e-290 1001.1 622 80.7
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 3.6e-290 1001.1 574 84.7
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 4.7e-290 1000.7 608 80.9
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 6.1e-290 1000.3 587 82.8
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.8e-289 998.8 607 81.5
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 1.8e-289 998.8 606 81.4
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 2.3e-289 998.4 621 80.0
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 4.0e-289 997.7 621 80.0
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 4.0e-289 997.7 621 80.0
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 8.8e-289 996.5 621 79.7
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.2e-288 996.1 607 81.7
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.6e-288 995.0 611 79.7
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 3.4e-288 994.6 596 82.0
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 3.4e-288 994.6 591 83.4
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 4.4e-288 994.2 599 82.5
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 9.7e-288 993.0 619 79.8
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 1.7e-287 992.3 601 81.7
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 2.2e-287 991.9 607 81.1
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.2e-287 991.9 568 84.5
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 2.8e-287 991.5 617 78.6
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 4.8e-287 990.7 593 82.6
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 4.8e-287 990.7 615 79.3
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 6.3e-287 990.3 617 78.6
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 6.3e-287 990.3 573 84.1
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 8.3e-287 989.9 619 79.8
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 1.1e-286 989.6 621 78.9
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 1.4e-286 989.2 609 81.3
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 1.4e-286 989.2 617 79.1
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 1.8e-286 988.8 610 80.7
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 1.8e-286 988.8 576 83.9
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 1.8e-286 988.8 608 81.7
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 2.4e-286 988.4 606 80.4
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 2.4e-286 988.4 590 81.7
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 2.4e-286 988.4 614 80.6
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.4e-286 988.4 617 79.1
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 3.1e-286 988.0 616 79.1
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 3.1e-286 988.0 613 80.3
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 4.1e-286 987.6 607 80.2
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 4.1e-286 987.6 608 80.3
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 4.1e-286 987.6 613 80.8
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 1.6e-285 985.7 560 85.0
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 4.5e-285 984.2 628 78.8
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 4.5e-285 984.2 568 84.5
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 4.5e-285 984.2 601 80.2
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 4.5e-285 984.2 607 80.9
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 5.9e-285 983.8 603 80.4
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 1.0e-284 983.0 610 80.2
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 1.3e-284 982.6 559 85.0
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 1.3e-284 982.6 568 84.2
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 2.2e-284 981.9 602 81.1
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 3.8e-284 981.1 607 80.6
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 1.5e-283 979.2 615 78.0
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 1.9e-283 978.8 614 78.5
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 2.5e-283 978.4 596 80.7
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 2.5e-283 978.4 592 80.7
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 2.5e-283 978.4 606 80.0
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 2.5e-283 978.4 606 80.0
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 4.2e-283 977.6 601 80.7
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 5.5e-283 977.2 608 80.4
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 7.2e-283 976.9 586 81.9
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.2e-282 976.1 609 79.0
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 4.7e-282 974.2 620 77.3
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 8.0e-282 973.4 627 78.0
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 1.0e-281 973.0 615 78.9
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 5.2e-281 970.7 610 79.3
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 6.8e-281 970.3 614 78.8
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 6.8e-281 970.3 614 78.8
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 8.8e-281 969.9 608 79.6
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 8.8e-281 969.9 612 78.3
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 8.8e-281 969.9 606 79.2
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 1.2e-280 969.5 616 78.2
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 1.2e-280 969.5 600 78.7
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 1.5e-280 969.1 614 78.7
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 1.5e-280 969.1 614 78.7
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 2.6e-280 968.4 613 78.6
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 3.4e-280 968.0 610 78.5
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 4.4e-280 967.6 609 78.8
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.3e-279 966.1 603 79.3
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 3.7e-279 964.5 577 82.3
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.8e-278 962.2 592 80.9
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 1.8e-278 962.2 628 77.2
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 1.8e-278 962.2 564 81.9
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 5.4e-278 960.7 597 80.6
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 4.5e-277 957.6 635 75.3
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 4.0e-273 944.5 660 73.0
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 8.9e-273 943.3 582 80.1
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 5.7e-272 940.6 560 81.2
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 9.8e-272 939.9 574 78.9
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 9.8e-272 939.9 527 85.8
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 8.3e-271 936.8 568 80.6
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.1e-270 936.4 679 70.4
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 5.0e-268 927.5 557 79.0
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 7.3e-267 923.7 570 79.1
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.7e-263 911.4 555 82.0
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 1.1e-262 909.8 563 78.2
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 1.1e-259 899.8 612 74.7
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 4.3e-259 897.9 558 77.8
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 7.8e-253 877.1 575 76.5
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.0e-252 875.2 527 79.5
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 6.2e-250 867.5 539 78.8
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.3e-244 849.7 624 69.7
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.7e-244 849.4 619 71.1
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 4.7e-242 841.3 561 72.2
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.5e-240 836.3 611 71.0
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 2.9e-239 832.0 557 71.8
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.5e-227 793.1 490 80.0
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 3.4e-224 781.9 504 77.2
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 3.9e-220 768.5 490 78.6
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 1.9e-219 766.1 552 66.8
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 2.1e-218 762.7 482 80.7
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.8e-218 762.3 433 85.5
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.2e-213 746.9 426 84.7
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.6e-210 736.5 490 74.9
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 9.0e-209 730.7 433 80.1
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 4.6e-205 718.4 597 61.0
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.3e-204 716.8 440 78.9
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 3.3e-187 659.1 403 79.9
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 8.5e-175 617.8 433 73.2
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 9.1e-169 597.8 599 52.4
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 3.4e-155 552.7 312 85.6
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 8.6e-151 538.1 384 73.7
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.3e-127 461.1 339 72.3
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 2.8e-117 426.8 287 75.6
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 1.6e-104 384.4 277 67.5
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 9.0e-100 368.6 216 84.3
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 2.9e-74 283.9 206 71.4
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 9.4e-73 278.9 197 73.1
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 4.7e-72 276.6 553 32.9
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 2.0e-67 261.2 150 83.3
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 3.1e-60 237.3 131 87.0
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 9.4e-57 225.7 126 84.9
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 1.2e-56 225.3 133 78.2
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 1.1e-52 212.2 117 90.6
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 1.0e-50 205.7 184 62.0
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 2.9e-50 204.1 109 90.8
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 1.9e-49 201.4 114 83.3
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 8.0e-48 196.1 115 79.1
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 2.4e-44 184.5 115 76.5
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 2.0e-43 181.4 212 53.8
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.7e-43 181.0 105 81.0
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 1.5e-41 175.3 125 69.6
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 4.3e-41 173.7 251 45.4
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 8.3e-37 159.5 143 58.0
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 5.6e-33 146.7 119 67.2
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 6.0e-27 126.7 116 60.3
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 3.9e-26 124.0 61 95.1
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 8.6e-26 122.9 212 38.2
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 1.3e-21 109.0 70 68.6
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 2.2e-21 108.2 56 94.6
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.4e-15 88.2 69 66.7
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 6.4e-13 80.1 183 28.4
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 1.6e-11 75.5 67 53.7
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 6.0e-11 73.6 85 55.3


User provided reference genes

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