Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 2.0e-235 818.9 475 100.0
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 2.1e-192 676.0 477 84.1
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 5.7e-166 588.2 484 72.3
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 1.5e-137 493.8 511 64.2
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 1.7e-133 480.3 485 67.2
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 2.0e-131 473.4 538 59.5
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.5e-118 430.6 480 61.2
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.5e-118 430.6 480 61.2
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 2.1e-115 420.2 481 61.5
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 6.0e-115 418.7 512 60.2
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 8.4e-109 398.3 485 60.4
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 1.3e-104 384.4 502 57.0
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 3.1e-103 379.8 501 51.1
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 1.2e-99 367.9 573 50.8
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 1.1e-95 354.8 481 51.1
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 3.1e-95 353.2 500 50.0
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 1.2e-94 351.3 485 49.9
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 3.4e-94 349.7 492 47.8
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 9.9e-94 348.2 485 53.2
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 4.2e-92 342.8 485 52.6
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 7.1e-92 342.0 488 50.6
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 1.2e-91 341.3 484 52.5
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 3.9e-90 336.3 480 52.3
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 6.7e-90 335.5 471 49.7
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 9.6e-89 331.6 500 50.2
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 2.1e-88 330.5 486 52.3
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 1.1e-87 328.2 485 48.7
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 1.8e-87 327.4 476 48.7
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 2.0e-86 323.9 489 51.7
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 1.0e-85 321.6 484 48.8
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 1.7e-85 320.9 485 48.2
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 4.2e-84 316.2 477 50.3
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 7.1e-84 315.5 486 48.4
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 1.6e-83 314.3 483 48.4
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 2.7e-83 313.5 484 47.5
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 1.0e-82 311.6 481 48.2
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 1.3e-82 311.2 492 48.2
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 1.9e-81 307.4 484 51.0
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 3.3e-81 306.6 553 46.5
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 3.3e-81 306.6 486 52.1
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 5.7e-81 305.8 477 48.4
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 2.2e-80 303.9 476 48.7
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 6.3e-80 302.4 482 49.2
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 8.2e-80 302.0 481 49.5
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 1.4e-79 301.2 484 48.6
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 2.4e-79 300.4 478 46.7
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 3.1e-79 300.1 486 50.4
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 4.1e-79 299.7 479 46.8
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 5.3e-79 299.3 478 46.7
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 2.0e-78 297.4 488 51.0
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 2.0e-78 297.4 479 44.5
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 3.4e-78 296.6 492 49.6
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 3.4e-78 296.6 493 49.3
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 3.4e-78 296.6 493 49.3
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 1.0e-77 295.0 486 49.8
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 1.7e-77 294.3 487 50.1
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 1.7e-77 294.3 486 45.1
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 8.5e-77 292.0 573 47.5
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 2.5e-76 290.4 475 44.8
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 7.2e-76 288.9 485 48.0
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 1.6e-75 287.7 485 47.8
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 1.6e-75 287.7 503 45.1
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 1.6e-75 287.7 503 45.3
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 2.7e-75 287.0 505 49.1
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 3.6e-75 286.6 600 40.8
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 3.6e-75 286.6 478 47.5
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 6.1e-75 285.8 493 46.2
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 1.8e-74 284.3 482 46.3
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 1.8e-74 284.3 510 45.1
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 3.0e-74 283.5 522 47.7
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 5.1e-74 282.7 476 45.6
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 1.1e-73 281.6 483 47.6
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 1.9e-73 280.8 482 49.4
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 2.5e-73 280.4 573 41.9
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.4e-71 274.6 478 44.8
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 3.2e-68 263.5 534 44.4
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 4.2e-68 263.1 530 45.1
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 1.6e-67 261.2 478 45.0
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 2.1e-67 260.8 479 45.9
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 3.6e-67 260.0 517 42.2
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 4.7e-67 259.6 516 46.7
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 7.9e-67 258.8 476 41.8
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 3.9e-66 256.5 480 47.3
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 5.1e-66 256.1 603 40.6
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 4.4e-65 253.1 584 39.0
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 9.7e-65 251.9 534 41.0
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.8e-63 247.7 623 38.7
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 3.1e-63 246.9 515 43.1
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 5.3e-63 246.1 608 39.1
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 6.9e-63 245.7 623 38.2
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 9.1e-63 245.4 476 40.8
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 2.2e-61 240.7 169 73.4
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 3.8e-61 240.0 649 36.8
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 1.2e-59 235.0 527 43.6
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 2.1e-59 234.2 553 41.2
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 3.9e-58 229.9 529 43.5
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 5.2e-58 229.6 630 38.6
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 3.3e-57 226.9 536 42.2
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 3.3e-57 226.9 244 58.2
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 1.6e-54 218.0 624 36.5
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 1.5e-49 201.4 278 48.9
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.3e-47 193.0 474 42.0
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 1.6e-46 191.4 681 34.2
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 2.2e-45 187.6 476 41.4
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 1.8e-42 177.9 212 53.8
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 1.7e-40 171.4 178 53.4
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 2.2e-40 171.0 519 38.7
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 5.4e-39 166.4 376 44.9
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 1.6e-35 154.8 175 55.4
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 6.1e-35 152.9 446 34.3
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 1.8e-34 151.4 162 58.0
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.8e-34 151.4 94 83.0
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 3.4e-33 147.1 113 73.5
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.3e-32 145.2 96 80.2
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 4.9e-32 143.3 150 56.7
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 4.1e-31 140.2 82 87.8
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 1.4e-26 125.2 108 64.8
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 8.9e-26 122.5 194 47.4
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 1.2e-25 122.1 104 63.5
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 5.8e-25 119.8 377 38.7
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 4.1e-23 113.6 176 38.1
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 4.6e-22 110.2 158 48.1
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 3.0e-21 107.5 171 46.8
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 5.0e-21 106.7 104 58.7
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.1e-18 97.4 63 77.8
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 4.0e-18 97.1 448 32.4
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 1.2e-17 95.5 108 56.5
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 7.0e-15 86.3 94 52.1
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 1.6e-14 85.1 87 55.2
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 5.1e-13 80.1 177 32.8
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.6e-11 75.1 111 43.2
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.1e-11 74.7 99 44.4
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 5.2e-10 70.1 60 63.3
Cfa024420 Carpinus fangiana HOM05D005328 ORTHO05D006049 5.2e-10 70.1 172 28.5
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 8.3e-08 62.8 142 35.9
CiPaw.09G114000 Carya illinoinensis HOM05D005328 ORTHO05D006049 1.4e-07 62.0 54 63.0
CiPaw.09G114200 Carya illinoinensis HOM05D005328 ORTHO05D006049 1.4e-07 62.0 54 63.0
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 1.6e-06 58.5 149 37.6
Potri.016G000501 Populus trichocarpa HOM05D005328 ORTHO05D006049 1.6e-06 58.5 62 61.3


User provided reference genes

Program Settings