Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 4.3e-164 581.3 291 100.0
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 4.6e-158 561.2 291 95.2
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 7.3e-156 553.9 291 93.8
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 6.4e-152 540.8 289 91.0
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 1.3e-149 533.1 289 90.7
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 1.7e-149 532.7 291 93.1
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 1.2e-147 526.6 289 90.0
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 4.0e-146 521.5 293 89.1
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 1.9e-140 502.7 289 84.1
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 1.6e-134 483.0 286 81.5
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 4.6e-134 481.5 286 81.8
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 3.0e-133 478.8 258 90.7
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 3.9e-133 478.4 287 79.8
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 5.1e-133 478.0 287 79.1
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 8.7e-133 477.2 287 79.8
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 1.6e-131 473.0 286 80.4
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 6.2e-131 471.1 288 79.2
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 1.1e-130 470.3 286 80.1
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 1.1e-130 470.3 256 90.6
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 9.0e-130 467.2 289 79.2
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 9.0e-130 467.2 287 77.4
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 2.0e-129 466.1 286 78.7
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 2.6e-129 465.7 289 76.8
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 2.6e-129 465.7 286 79.4
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 3.4e-129 465.3 286 79.7
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 4.5e-129 464.9 289 76.8
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 4.5e-129 464.9 285 78.9
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 4.5e-129 464.9 286 79.7
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 7.6e-129 464.2 288 78.1
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 7.6e-129 464.2 289 76.5
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 9.9e-129 463.8 286 77.6
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 9.9e-129 463.8 287 79.1
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 1.3e-128 463.4 284 79.2
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 2.9e-128 462.2 284 80.3
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 3.8e-128 461.8 287 78.4
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 6.4e-128 461.1 286 76.2
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 6.4e-128 461.1 288 77.4
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 6.4e-128 461.1 286 78.0
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 8.4e-128 460.7 288 77.8
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 1.1e-127 460.3 284 78.5
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 1.4e-127 459.9 289 76.1
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 1.9e-127 459.5 289 75.1
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 4.2e-127 458.4 286 78.0
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 5.5e-127 458.0 289 75.4
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 9.3e-127 457.2 286 76.9
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.2e-126 456.8 286 77.6
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 1.2e-126 456.8 299 74.9
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 1.6e-126 456.4 287 76.0
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 2.1e-126 456.1 286 75.9
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 2.1e-126 456.1 286 76.9
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.7e-126 455.7 286 77.6
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 3.5e-126 455.3 286 78.0
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 3.5e-126 455.3 284 77.8
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 4.6e-126 454.9 287 78.0
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 7.9e-126 454.1 284 78.2
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 1.0e-125 453.8 288 74.7
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 1.0e-125 453.8 288 74.7
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 1.0e-125 453.8 288 74.7
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 1.0e-125 453.8 288 75.0
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 1.0e-125 453.8 284 77.8
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 1.3e-125 453.4 286 77.6
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 1.3e-125 453.4 287 76.0
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 1.3e-125 453.4 289 76.1
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 2.3e-125 452.6 288 74.3
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 2.3e-125 452.6 288 74.3
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 3.0e-125 452.2 284 78.5
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 3.0e-125 452.2 284 78.5
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 3.0e-125 452.2 286 75.5
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 3.9e-125 451.8 286 78.0
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 3.9e-125 451.8 286 76.9
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 5.1e-125 451.4 286 76.6
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 6.7e-125 451.1 284 77.5
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 8.7e-125 450.7 288 74.0
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 8.7e-125 450.7 288 76.7
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 8.7e-125 450.7 288 76.7
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 1.1e-124 450.3 286 76.9
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 1.1e-124 450.3 284 77.1
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 1.1e-124 450.3 284 78.9
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.5e-124 449.9 285 76.8
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.5e-124 449.9 284 77.8
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 2.5e-124 449.1 285 76.8
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 2.5e-124 449.1 284 75.7
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 2.5e-124 449.1 284 78.5
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 3.3e-124 448.7 286 75.9
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 3.3e-124 448.7 288 76.0
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 4.3e-124 448.4 286 76.6
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 5.6e-124 448.0 286 75.9
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 7.4e-124 447.6 284 78.5
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 9.6e-124 447.2 292 74.3
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 1.6e-123 446.4 285 76.8
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 2.8e-123 445.7 285 74.7
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 2.8e-123 445.7 287 74.6
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 3.7e-123 445.3 287 74.6
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 4.8e-123 444.9 287 73.9
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 1.1e-122 443.7 286 75.9
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 2.4e-122 442.6 286 75.9
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 3.1e-122 442.2 288 75.3
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 5.3e-122 441.4 286 75.5
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 6.9e-122 441.0 287 74.2
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 9.0e-122 440.7 286 74.8
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 1.5e-121 439.9 287 73.5
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 3.4e-121 438.7 286 75.2
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 4.5e-121 438.3 286 75.2
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 4.5e-121 438.3 287 72.5
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 2.2e-120 436.0 287 73.2
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 3.8e-120 435.3 286 73.4
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 1.1e-119 433.7 287 74.2
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 2.5e-119 432.6 300 72.0
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 3.2e-119 432.2 319 69.0
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 9.3e-119 430.6 287 74.6
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 9.3e-119 430.6 305 70.2
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.2e-118 430.3 286 72.0
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 2.1e-118 429.5 299 71.6
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 2.7e-118 429.1 286 73.4
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 3.5e-118 428.7 284 74.3
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 4.6e-118 428.3 291 72.9
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 1.3e-117 426.8 284 73.9
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 8.7e-117 424.1 289 73.4
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 1.1e-116 423.7 286 73.4
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 2.5e-116 422.5 286 72.7
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 3.3e-116 422.2 232 89.7
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 7.4e-116 421.0 289 73.0
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 9.7e-116 420.6 287 72.5
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.4e-114 416.8 259 78.8
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 2.4e-114 416.0 286 72.0
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 6.9e-114 414.5 283 71.7
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 2.6e-113 412.5 288 71.9
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 3.4e-113 412.1 288 71.5
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 5.9e-113 411.4 288 71.5
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 2.2e-112 409.5 304 66.1
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 5.5e-111 404.8 271 73.4
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 2.1e-110 402.9 447 50.8
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 5.7e-108 394.8 291 69.1
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 2.2e-107 392.9 297 67.3
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 2.8e-107 392.5 304 67.1
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 2.2e-104 382.9 232 79.3
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 4.2e-103 378.6 289 62.6
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 4.2e-103 378.6 287 62.4
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 9.4e-103 377.5 287 62.4
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 1.0e-101 374.0 292 63.4
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 1.1e-100 370.5 229 77.3
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 2.0e-100 369.8 293 63.8
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 3.3e-100 369.0 285 62.1
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 1.4e-90 337.0 286 58.0
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 9.1e-90 334.3 297 60.3
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.0e-80 304.3 202 73.3
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 2.9e-80 302.8 281 54.8
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 8.3e-75 284.6 267 58.4
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 1.0e-72 277.7 282 50.4
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 6.6e-72 275.0 281 49.5
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 8.9e-69 264.6 285 48.1
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 2.2e-67 260.0 281 47.3
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 2.0e-60 236.9 164 68.3
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 4.7e-54 215.7 150 66.7
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 4.0e-53 212.6 151 72.2
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 4.1e-50 202.6 129 77.5
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 1.2e-49 201.1 111 85.6
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 6.2e-22 109.0 152 40.8
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 1.1e-21 108.2 145 41.4
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 4.0e-21 106.3 83 61.4
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 2.2e-19 100.5 77 64.9
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 2.9e-19 100.1 66 72.7
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.4e-18 97.8 79 64.6
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 3.2e-18 96.7 52 84.6
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 5.4e-18 95.9 79 64.6
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 1.6e-17 94.4 67 67.2
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 1.3e-16 91.3 79 62.0
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 3.3e-15 86.7 56 71.4
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 4.8e-14 82.8 58 65.5
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 4.8e-14 82.8 58 65.5
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 1.4e-13 81.3 80 57.5
VMungo0540G1336 Vigna mungo HOM05D000328 ORTHO05D000191 1.2e-09 68.2 41 80.5
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 2.3e-08 63.9 54 63.0
AUR62044460 Chenopodium quinoa HOM05D004135 ORTHO05D137931 2.1e-06 57.4 37 73.0


User provided reference genes

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