Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 0.0e+00 1374.0 692 100.0
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 0.0e+00 1272.7 699 92.1
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 0.0e+00 1228.0 692 89.0
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 0.0e+00 1185.6 692 87.3
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 2.1e-302 1042.0 696 76.6
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 1.2e-300 1036.2 700 75.7
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 3.6e-294 1014.6 703 74.5
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 1.4e-293 1012.7 703 74.4
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 4.1e-290 1001.1 699 73.1
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 2.7e-281 971.8 693 73.2
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 6.2e-278 960.7 703 71.0
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 5.6e-271 937.6 699 69.8
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 1.6e-270 936.0 700 70.6
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 3.8e-259 898.3 697 66.4
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 9.3e-258 893.6 698 66.0
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 3.5e-257 891.7 694 66.3
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 5.6e-255 884.4 696 65.8
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 2.8e-254 882.1 690 67.1
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 2.8e-254 882.1 696 65.9
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 4.8e-254 881.3 692 66.5
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 4.0e-253 878.2 703 64.6
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 1.4e-250 869.8 695 64.3
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 1.6e-249 866.3 695 65.3
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 2.3e-248 862.4 705 64.5
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 6.6e-248 860.9 696 64.2
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 3.3e-247 858.6 690 63.9
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 9.6e-247 857.1 689 63.3
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 9.6e-247 857.1 690 63.5
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 1.1e-245 853.6 697 64.1
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 9.0e-245 850.5 696 64.7
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 3.4e-244 848.6 699 63.5
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 3.4e-244 848.6 689 63.4
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 3.8e-243 845.1 703 63.7
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 4.9e-243 844.7 688 63.8
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.1e-242 843.6 703 63.7
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 2.1e-241 839.3 694 62.2
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 2.1e-241 839.3 693 63.5
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 1.0e-240 837.0 706 63.7
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 3.0e-240 835.5 696 63.2
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 6.7e-240 834.3 698 63.0
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 2.5e-239 832.4 706 62.2
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 1.3e-238 830.1 689 63.0
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 1.3e-238 830.1 691 63.5
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 1.3e-238 830.1 714 61.5
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 2.4e-237 825.9 713 61.7
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 9.0e-237 823.9 695 63.3
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 9.0e-237 823.9 680 62.4
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 4.5e-236 821.6 711 62.2
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 1.0e-235 820.5 703 61.6
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 2.5e-234 815.8 684 62.6
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 3.5e-233 812.0 700 60.4
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 2.5e-231 805.8 697 61.1
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 8.2e-230 800.8 566 72.4
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 1.1e-229 800.4 687 60.3
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 1.8e-229 799.7 734 58.7
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 8.7e-224 780.8 650 62.6
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 7.4e-223 777.7 729 58.2
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 2.2e-222 776.2 698 59.0
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 3.7e-222 775.4 634 62.8
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 1.2e-220 770.4 709 57.7
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 2.6e-220 769.2 701 58.3
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 3.4e-220 768.8 697 59.0
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 5.9e-220 768.1 705 59.6
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 5.1e-216 755.0 536 71.3
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 3.4e-212 742.3 703 56.6
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.7e-211 740.0 701 58.8
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 3.9e-208 728.8 696 56.9
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 1.1e-207 727.2 668 59.4
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 1.7e-206 723.4 796 52.1
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 1.1e-205 720.7 685 57.7
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 5.0e-203 711.8 695 56.5
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 8.5e-203 711.1 716 54.7
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 8.8e-200 701.0 572 62.9
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 1.5e-199 700.3 697 54.8
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 9.1e-197 691.0 536 65.1
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 1.7e-195 686.8 693 56.0
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 3.8e-195 685.6 711 54.6
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 2.5e-194 682.9 517 65.6
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 3.4e-191 672.5 532 65.2
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 7.7e-188 661.4 692 51.6
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 4.2e-186 655.6 443 73.4
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.2e-183 647.5 530 64.0
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 2.6e-175 619.8 494 64.0
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 3.2e-173 612.8 723 46.6
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 5.4e-173 612.1 699 49.5
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 9.2e-173 611.3 720 47.6
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 1.9e-170 603.6 708 50.0
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 8.1e-161 571.6 392 73.5
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 9.9e-151 538.1 722 42.5
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 2.6e-143 513.5 454 59.0
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 4.4e-143 512.7 494 57.7
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 1.9e-138 497.3 407 60.9
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.2e-132 478.0 352 68.5
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.1e-132 477.2 348 69.3
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 4.6e-132 476.1 350 67.7
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 1.8e-131 474.2 350 67.4
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 7.4e-130 468.8 348 68.1
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 2.1e-124 450.7 754 37.5
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 1.1e-120 438.3 360 60.8
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 4.2e-117 426.4 803 35.2
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 1.3e-110 404.8 786 37.7
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 4.8e-105 386.3 707 36.2
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 3.1e-104 383.6 315 63.5
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 4.8e-97 359.8 319 56.4
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 5.9e-95 352.8 729 32.9
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 4.2e-93 346.7 345 51.9
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 1.4e-88 331.6 312 59.6
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 2.9e-70 270.8 289 52.6
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.0e-67 260.8 206 65.0
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 1.8e-64 251.5 660 29.8
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 2.4e-64 251.1 322 46.0
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 9.2e-64 249.2 258 57.0
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 7.3e-61 239.6 163 69.3
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.3e-59 234.6 195 60.5
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 1.1e-56 225.7 194 58.2
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 4.1e-56 223.8 168 68.5
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 2.7e-55 221.1 174 63.2
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.5e-50 205.3 267 48.7
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 2.2e-49 201.4 214 54.7
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 6.2e-44 183.3 176 54.5
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 3.4e-42 177.6 154 57.8
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 1.9e-32 145.2 133 57.1
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 3.2e-32 144.4 156 54.5
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 2.0e-26 125.2 143 53.8
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 2.4e-24 118.2 152 48.0
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 7.8e-23 113.2 141 47.5
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.3e-22 112.5 148 48.0
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 4.5e-18 97.4 140 45.7
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 3.3e-13 81.3 51 74.5
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 2.1e-12 78.6 51 72.5
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 4.0e-11 74.3 148 37.8
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 4.5e-10 70.9 48 72.9
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 8.4e-09 66.6 35 94.3


User provided reference genes

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