Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 3884.0 1976 100.0
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 3232.6 1977 83.5
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 2779.6 1980 72.0
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 2721.4 2006 70.5
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 2710.3 1991 70.2
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 2683.7 1981 70.4
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 2657.1 1980 69.6
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 2638.6 1957 70.2
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 2542.3 2030 65.5
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 2516.5 2007 65.7
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 2457.9 1511 82.9
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 1749.6 2029 48.4
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 1687.5 2020 47.0
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 1662.9 2023 46.1
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 1659.8 2025 47.1
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 1622.1 2038 45.9
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1612.4 2026 44.3
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1596.6 2034 43.8
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 1590.9 2026 45.7
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 1589.3 2029 44.6
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1585.1 2083 44.1
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 1567.4 2048 43.7
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 1546.2 2033 43.7
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1543.1 2038 43.7
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 1526.5 2033 43.4
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1518.8 2027 43.1
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1510.4 2025 43.1
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1504.2 2030 43.4
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1498.8 2107 42.1
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1486.1 2033 42.7
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1439.1 2030 41.6
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1412.5 2028 41.5
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1361.3 2150 40.0
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1337.4 2020 40.3
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1325.1 2091 39.0
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1317.4 1677 44.4
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1313.9 2053 38.1
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1310.0 2030 39.9
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1307.4 2028 40.0
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1305.0 2036 39.5
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1286.9 2020 38.1
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1285.0 2034 39.8
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1271.9 2029 39.8
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1263.1 1753 42.5
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1246.1 1795 40.6
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1241.9 2019 37.3
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1240.3 2038 38.8
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1239.2 2015 37.6
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1233.0 2035 38.0
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1229.2 2026 38.1
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1224.2 2021 37.6
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1223.4 2077 37.4
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1220.3 2027 37.8
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1213.7 2023 38.3
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1211.4 2020 37.3
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1210.3 2021 37.3
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1201.4 2032 37.8
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1196.8 2078 36.7
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1181.4 2024 37.2
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1176.4 2088 36.5
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1173.3 1808 40.2
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1172.9 2036 37.8
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1164.4 2069 36.5
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1161.7 1947 37.9
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1158.3 2070 36.3
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1152.9 2046 36.3
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1142.5 2055 36.5
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1142.1 2045 36.0
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1127.9 2013 36.2
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1127.9 2027 36.7
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1115.9 2013 37.1
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1112.8 1767 39.4
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1107.8 2178 34.0
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1102.8 2047 36.1
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1102.0 2054 35.6
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1102.0 1986 35.9
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1094.7 2047 35.8
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1093.2 2053 35.6
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1092.8 2026 36.4
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1088.2 2080 35.5
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1087.8 1993 35.9
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 4.6e-310 1068.9 2021 36.3
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 2.5e-308 1063.1 2085 34.7
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 1.6e-307 1060.4 1972 36.1
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 6.0e-302 1042.0 2024 36.2
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 3.0e-301 1039.6 1797 38.3
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 9.0e-282 974.9 2029 33.5
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 4.5e-281 972.6 2035 33.9
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 1.1e-279 968.0 2010 32.4
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 4.6e-278 962.6 533 91.2
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 1.2e-273 948.0 1762 34.7
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 6.9e-266 922.2 1832 35.0
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.7e-264 917.5 1218 43.2
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 5.2e-237 826.2 1710 32.6
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 5.4e-226 789.6 1484 35.5
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 3.1e-213 747.3 1548 33.9
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 9.8e-212 742.3 909 46.8
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 3.2e-210 737.3 1418 34.0
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 6.8e-197 693.0 809 46.7
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.8e-176 625.2 1253 35.6
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 7.4e-175 619.8 1920 28.3
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 2.1e-169 601.7 1146 35.7
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 3.5e-132 478.0 1086 34.5
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.7e-131 475.7 565 47.1
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 2.4e-125 455.3 1138 31.2
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 9.8e-119 433.3 909 34.0
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.1e-101 376.7 878 33.1
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 3.3e-98 365.2 842 31.4
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 5.6e-98 364.4 2112 23.3
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 4.7e-97 361.3 490 42.7
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 8.9e-96 357.1 2108 23.6
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 6.4e-94 350.9 421 46.6
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 1.1e-93 350.1 1246 27.1
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 4.0e-88 331.6 1992 23.9
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 6.8e-88 330.9 477 44.4
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 1.2e-79 303.5 183 85.8
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.6e-49 203.4 348 36.2
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 1.1e-45 190.7 241 43.6
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 5.7e-42 178.3 200 47.0
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 3.7e-41 175.6 531 27.1
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 4.1e-40 172.2 423 28.8
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 2.9e-38 166.0 245 41.6
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 4.6e-36 158.7 232 39.7
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 7.9e-36 157.9 280 35.4
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.0e-35 157.5 148 54.7
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.9e-35 155.6 316 33.5
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 1.1e-34 154.1 143 58.0
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 3.3e-34 152.5 328 34.5
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 1.7e-33 150.2 207 43.5
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.4e-32 146.4 198 41.9
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.7e-30 140.2 191 39.8
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 3.2e-29 136.0 162 42.0
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 3.6e-28 132.5 348 29.0
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 7.9e-28 131.3 89 73.0
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 3.0e-27 129.4 124 53.2
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.3e-25 124.0 245 31.8
Psat5g198920 Pisum sativum HOM05D003876 ORTHO05D004560 1.7e-25 123.6 87 69.0
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 5.3e-24 118.6 122 50.0
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 1.7e-22 113.6 236 34.7
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 9.4e-21 107.8 342 27.2
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 4.7e-20 105.5 157 42.0
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 1.8e-16 93.6 236 26.7
arahy.Tifrunner.gnm1.ann1.PHJ7DT Arachis hypogaea HOM05D003876 ORTHO05D004560 4.1e-16 92.4 148 40.5
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 9.1e-16 91.3 141 34.8
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 1.2e-15 90.9 119 46.2
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 1.9e-13 83.6 39 97.4
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 1.2e-12 80.9 82 50.0
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 1.2e-12 80.9 82 50.0
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 2.7e-12 79.7 72 54.2
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 1.8e-11 77.0 97 44.3
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 4.0e-11 75.9 64 54.7
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 9.8e-10 71.2 113 38.1
Psat5g198960 Pisum sativum HOM05D000263 ORTHO05D000213 6.3e-09 68.6 52 69.2
SEGI_04455 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.0e-07 63.5 105 29.5
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 7.7e-07 61.6 410 23.4
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 1.7e-06 60.5 77 42.9


User provided reference genes

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