Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 2.1e-179 632.5 373 100.0
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 6.5e-165 584.3 376 91.5
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 4.6e-163 578.2 376 91.0
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 6.1e-163 577.8 375 89.9
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 1.3e-162 576.6 375 89.9
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 1.5e-158 563.1 374 86.6
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 3.4e-158 562.0 375 87.2
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 2.1e-155 552.7 375 85.9
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 2.6e-153 545.8 375 85.3
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 1.3e-152 543.5 372 86.0
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 1.3e-152 543.5 372 86.0
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 1.7e-149 533.1 375 70.7
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 6.3e-144 514.6 374 78.1
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 1.4e-143 513.5 371 66.6
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 3.1e-143 512.3 373 67.0
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 9.1e-143 510.8 393 66.4
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 1.0e-141 507.3 374 79.7
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 6.5e-141 504.6 376 65.2
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 6.5e-141 504.6 376 64.9
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 1.9e-140 503.1 377 64.5
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 4.2e-140 501.9 338 74.3
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 1.6e-139 500.0 374 69.8
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 2.7e-139 499.2 376 77.7
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 3.6e-139 498.8 376 64.1
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 1.4e-138 496.9 374 65.0
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 1.8e-138 496.5 376 63.8
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 5.2e-138 495.0 376 63.6
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 6.7e-138 494.6 375 62.9
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 8.8e-138 494.2 375 74.1
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.2e-137 493.8 375 62.9
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 1.5e-137 493.4 376 73.9
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 2.0e-137 493.0 374 64.2
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 2.6e-137 492.7 375 63.5
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 2.6e-137 492.7 375 63.2
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 3.3e-137 492.3 375 62.7
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 5.7e-137 491.5 377 76.9
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 5.7e-137 491.5 334 73.7
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 1.3e-136 490.3 383 73.4
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 1.7e-136 490.0 376 63.6
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 1.7e-136 490.0 375 72.3
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.2e-136 489.6 374 64.4
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 2.8e-136 489.2 376 73.4
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 4.8e-136 488.4 375 63.2
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 1.8e-135 486.5 376 73.7
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 2.4e-135 486.1 374 73.0
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 7.0e-135 484.6 374 62.6
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 2.0e-134 483.0 376 61.2
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 1.7e-133 479.9 374 62.3
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 2.9e-133 479.2 370 73.5
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 1.9e-132 476.5 375 62.1
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 1.9e-132 476.5 375 62.1
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 2.5e-132 476.1 385 61.3
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 1.6e-131 473.4 378 61.4
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 2.1e-131 473.0 375 61.6
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 3.6e-131 472.2 375 61.3
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 4.7e-131 471.9 375 61.3
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 8.0e-131 471.1 376 74.7
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 1.8e-130 469.9 375 60.0
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 2.3e-130 469.5 375 61.3
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 2.3e-130 469.5 375 61.3
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 2.3e-130 469.5 375 61.3
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 3.0e-130 469.2 375 61.1
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 6.8e-130 468.0 375 61.3
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 1.2e-129 467.2 376 60.9
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 9.8e-129 464.2 376 59.6
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 2.8e-128 462.6 375 60.5
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 2.8e-128 462.6 378 60.1
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.8e-127 459.9 353 66.0
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 2.4e-127 459.5 372 61.3
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 1.2e-126 457.2 377 61.5
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 1.6e-126 456.8 378 59.0
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 2.0e-126 456.4 377 61.3
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 3.5e-126 455.7 377 61.3
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 1.0e-125 454.1 375 59.7
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 1.0e-125 454.1 377 59.7
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 1.3e-125 453.8 408 59.3
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 1.7e-125 453.4 377 59.2
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 2.3e-125 453.0 377 60.2
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 2.9e-125 452.6 377 61.0
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 5.0e-125 451.8 383 60.3
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 1.1e-124 450.7 380 57.6
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 1.5e-124 450.3 374 58.8
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 3.2e-124 449.1 376 60.6
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 4.2e-124 448.7 415 54.9
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 4.2e-124 448.7 341 63.9
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 5.5e-124 448.4 379 59.9
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 1.8e-122 443.4 374 57.5
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 6.8e-122 441.4 372 57.8
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 8.9e-122 441.0 376 58.8
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 2.6e-121 439.5 368 67.4
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 2.6e-121 439.5 378 56.6
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 5.7e-121 438.3 380 60.5
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 3.7e-120 435.6 368 57.6
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 4.9e-120 435.3 376 70.7
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 1.1e-119 434.1 381 58.3
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 3.5e-118 429.1 373 58.4
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 1.7e-117 426.8 361 60.7
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 3.3e-116 422.5 353 60.6
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 3.0e-114 416.0 257 75.9
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 8.9e-114 414.5 367 55.6
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 2.2e-112 409.8 370 56.2
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 4.1e-111 405.6 368 55.4
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 1.6e-110 403.7 384 54.2
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 6.6e-109 398.3 256 74.6
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 2.1e-107 393.3 361 56.5
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 2.0e-105 386.7 335 57.6
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 2.0e-105 386.7 371 54.7
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 2.5e-100 369.8 281 76.2
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 2.1e-99 366.7 368 51.6
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 4.7e-99 365.5 281 62.3
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 3.1e-98 362.8 379 47.5
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.2e-94 350.9 388 48.7
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 2.1e-94 350.1 388 46.1
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 1.5e-92 344.0 382 52.1
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 3.3e-92 342.8 377 51.5
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 1.4e-90 337.4 368 47.3
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 1.3e-85 320.9 253 62.1
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 1.2e-81 307.8 257 58.4
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 9.3e-79 298.1 183 75.4
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 1.9e-76 290.4 253 54.2
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 6.2e-75 285.4 219 64.8
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 6.4e-72 275.4 306 57.8
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 7.9e-70 268.5 213 64.8
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 3.9e-69 266.2 211 64.5
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 8.4e-64 248.4 375 40.3
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 2.4e-63 246.9 230 53.9
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 6.2e-59 232.3 146 74.0
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 1.0e-56 224.9 150 70.7
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 1.9e-55 220.7 539 29.5
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 3.8e-48 196.4 153 60.1
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 4.8e-43 179.5 103 79.6
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.1e-42 178.3 103 79.6
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 2.1e-38 164.1 278 37.8
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 1.5e-36 157.9 368 28.0
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 1.9e-23 114.4 146 47.3
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 2.7e-22 110.5 61 75.4
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 9.7e-20 102.1 57 82.5
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.8e-18 97.8 66 69.7
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 1.7e-16 91.3 59 64.4
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 3.2e-15 87.0 192 28.6
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.6e-14 84.7 52 69.2
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 1.4e-13 81.6 78 52.6
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 6.8e-13 79.3 279 30.5
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 1.7e-11 74.7 48 72.9
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 5.4e-10 69.7 37 83.8
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 7.2e-07 59.3 43 55.8


User provided reference genes

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