Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 0.0e+00 1678.7 989 100.0
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 0.0e+00 1494.6 990 89.6
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 0.0e+00 1350.9 991 83.1
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 0.0e+00 1313.9 991 81.3
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 0.0e+00 1257.7 998 78.1
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 0.0e+00 1246.9 989 75.7
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 0.0e+00 1232.2 993 75.0
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 0.0e+00 1203.7 999 75.9
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 0.0e+00 1201.8 1009 75.6
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 0.0e+00 1179.1 1023 73.1
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 0.0e+00 1159.1 989 72.1
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 0.0e+00 1078.2 989 70.7
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 8.2e-308 1060.4 1128 60.7
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 2.3e-302 1042.3 1012 65.9
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 1.8e-299 1032.7 1145 59.0
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 5.9e-298 1027.7 1001 66.9
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 1.7e-297 1026.2 992 67.2
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 3.6e-295 1018.5 1040 63.1
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 5.1e-294 1014.6 988 65.0
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 8.8e-294 1013.8 996 66.8
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 1.5e-293 1013.1 994 66.7
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 4.4e-293 1011.5 996 67.1
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 8.2e-292 1007.3 1018 63.9
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 1.8e-291 1006.1 999 64.6
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 2.0e-290 1002.7 993 65.0
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 7.9e-287 990.7 990 65.8
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 2.3e-286 989.2 1011 66.2
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 2.0e-285 986.1 1152 59.4
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 7.4e-285 984.2 1053 62.4
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 7.4e-285 984.2 992 65.2
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 1.3e-284 983.4 993 66.4
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 8.2e-284 980.7 1018 63.3
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 1.8e-283 979.5 992 66.0
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 2.4e-283 979.2 1009 65.3
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 1.2e-282 976.9 994 65.2
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 1.6e-282 976.5 1000 64.5
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 2.2e-281 972.6 1037 61.6
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 3.8e-281 971.8 1043 61.2
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 6.5e-281 971.1 994 65.6
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 3.2e-280 968.8 989 62.9
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 6.1e-279 964.5 1051 61.0
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 5.3e-275 951.4 990 62.9
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 1.2e-274 950.3 999 64.9
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.0e-274 949.5 991 64.3
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.0e-274 949.5 994 64.3
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 7.7e-274 947.6 1005 61.5
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 7.7e-274 947.6 1032 62.0
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 1.3e-273 946.8 1025 62.5
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 8.5e-273 944.1 994 64.3
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 1.0e-270 937.2 990 63.1
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.4e-270 936.8 996 61.7
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 5.2e-270 934.9 995 60.9
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 3.4e-269 932.2 984 64.0
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 3.4e-269 932.2 1011 60.9
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 4.4e-269 931.8 993 63.2
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 8.3e-268 927.5 996 63.6
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 8.3e-268 927.5 1034 59.6
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 1.4e-267 926.8 994 63.2
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 5.9e-266 921.4 1068 60.2
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 6.5e-265 917.9 1013 60.6
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 8.6e-265 917.5 988 62.1
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 1.1e-264 917.1 1031 58.5
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 4.2e-264 915.2 990 61.8
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 2.1e-263 912.9 988 60.2
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 8.0e-263 911.0 984 60.8
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 6.8e-262 907.9 993 62.0
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 2.0e-261 906.4 1003 59.5
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 2.0e-261 906.4 1002 59.6
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 3.4e-261 905.6 994 59.5
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 7.5e-261 904.4 1007 62.0
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 1.1e-259 900.6 997 59.4
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 1.4e-259 900.2 1028 60.2
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 1.8e-259 899.8 1092 58.0
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 3.1e-259 899.0 990 60.0
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 4.1e-259 898.7 998 60.1
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 7.0e-259 897.9 1015 59.5
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 2.0e-258 896.3 1036 59.0
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 2.0e-258 896.3 736 74.7
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 4.5e-258 895.2 994 59.4
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 5.0e-257 891.7 993 59.7
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 2.5e-256 889.4 997 60.5
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 4.3e-256 888.6 989 61.6
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 6.1e-255 884.8 995 59.5
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 1.4e-254 883.6 1019 58.1
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 1.8e-254 883.2 1032 58.1
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 2.0e-253 879.8 1000 60.9
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 1.3e-252 877.1 1025 59.0
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 2.9e-252 875.9 1022 57.7
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 1.8e-251 873.2 1035 58.1
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 3.5e-250 869.0 1028 57.4
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 1.0e-249 867.5 1038 57.0
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 9.5e-248 860.9 1020 57.4
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 4.7e-247 858.6 1007 59.7
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 3.1e-246 855.9 995 58.6
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 2.6e-245 852.8 979 57.1
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 2.6e-245 852.8 1032 55.7
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 1.3e-244 850.5 1024 56.5
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 1.9e-243 846.7 1012 59.1
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 2.7e-242 842.8 979 59.9
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 6.0e-242 841.6 1011 59.3
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 2.5e-240 836.3 1019 56.3
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 9.5e-240 834.3 1020 56.4
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 4.7e-239 832.0 1035 56.0
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 8.1e-239 831.2 1021 55.5
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 2.7e-234 816.2 1003 57.1
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 4.6e-234 815.5 1004 55.9
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 6.0e-234 815.1 989 58.4
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 3.1e-230 802.7 1018 56.3
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 2.0e-229 800.0 1038 54.0
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 4.4e-229 798.9 989 58.4
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 9.2e-227 791.2 997 54.7
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 3.5e-226 789.3 984 55.6
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 7.6e-221 771.5 989 54.3
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 1.2e-218 764.2 1030 52.4
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 1.3e-217 760.8 1002 53.8
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 1.3e-209 734.2 1051 50.4
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 1.3e-207 727.6 1028 54.4
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 1.4e-198 697.6 1004 51.8
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 2.2e-191 673.7 1084 46.7
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 6.5e-180 635.6 486 77.0
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 1.8e-166 590.9 1012 44.0
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 2.7e-162 577.0 906 48.6
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 2.0e-160 570.9 998 44.6
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 1.3e-159 568.2 779 52.9
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 2.9e-148 530.4 551 60.6
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 9.5e-147 525.4 721 52.3
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 2.0e-133 481.1 719 48.1
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 1.2e-114 418.7 392 65.3
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 1.7e-100 371.7 1061 35.0
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 9.7e-75 286.2 520 49.0
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 1.1e-70 272.7 478 45.4
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 5.7e-67 260.4 315 59.4
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 4.8e-58 230.7 337 49.3
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 7.0e-57 226.9 137 94.9
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 4.8e-50 204.1 163 71.8
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 5.5e-46 190.7 194 58.2
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 1.1e-41 176.4 623 30.8
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 2.7e-40 171.8 324 40.4
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 3.5e-40 171.4 232 53.9
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 8.8e-36 156.8 364 36.3
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 6.3e-34 150.6 120 75.0
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 1.1e-33 149.8 510 33.5
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 2.0e-32 145.6 133 67.7
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 6.6e-31 140.6 179 54.7
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 3.6e-29 134.8 398 33.4
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 1.8e-28 132.5 400 39.0
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 2.3e-28 132.1 161 57.1
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 6.8e-28 130.6 88 77.3
HanXRQChr16g0500831 Helianthus annuus HOM05D003521 ORTHO05D000476 2.0e-27 129.0 83 79.5
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 2.6e-27 128.6 464 32.3
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 4.4e-27 127.9 78 91.0
Dinv38016 Davidia involucrata HOM05D003521 ORTHO05D000476 4.9e-26 124.4 98 69.4
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 3.2e-25 121.7 107 66.4
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 5.4e-25 120.9 582 30.1
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 3.5e-24 118.2 451 30.4
arahy.Tifrunner.gnm1.ann1.J2PPD0 Arachis hypogaea HOM05D003521 ORTHO05D000476 4.6e-24 117.9 101 68.3
CBR_g37651 Chara braunii HOM05D003521 ORTHO05D000476 2.3e-23 115.5 664 25.6
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 3.9e-23 114.8 357 31.1
arahy.Tifrunner.gnm1.ann1.SA7FDN Arachis hypogaea HOM05D003521 ORTHO05D000476 1.1e-22 113.2 63 96.8
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.5e-22 112.8 75 85.3
Mapoly0111s0038 Marchantia polymorpha HOM05D003521 ORTHO05D000476 3.3e-22 111.7 606 26.4
Ca_01133_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 5.6e-22 110.9 218 49.1
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 1.2e-21 109.8 84 72.6
Ca_16259_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000476 1.4e-20 106.3 73 82.2
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 5.2e-20 104.4 184 43.5
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 5.8e-19 100.9 97 66.0
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.4e-17 95.5 60 91.7
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 3.2e-17 95.1 176 44.9
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 3.0e-15 88.6 60 83.3
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 1.5e-14 86.3 74 70.3
PSO596G0006 Papaver somniferum HOM05D003521 ORTHO05D000476 2.1e-13 82.4 65 70.8
PSO596G0043 Papaver somniferum HOM05D003521 ORTHO05D000476 2.1e-13 82.4 65 70.8
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 3.6e-13 81.6 88 60.2
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 4.0e-12 78.2 177 40.1
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 7.5e-11 73.9 79 58.2
AagrBONN_evm.TU.Sc2ySwM_344.1936 Anthoceros agrestis HOM05D003521 ORTHO05D000476 4.9e-10 71.2 158 37.3
C09p10740 Brassica napus HOM05D003521 ORTHO05D000476 3.2e-09 68.6 88 52.3
HanXRQChr01g0011031 Helianthus annuus HOM05D003521 ORTHO05D000476 1.2e-08 66.6 45 80.0
Prupe.5G245900 Prunus persica HOM05D003521 ORTHO05D000476 1.7e-07 62.8 187 31.6
Thecc.08G046800 Theobroma cacao HOM05D003521 ORTHO05D000476 3.0e-07 62.0 73 57.5
Cfa026401 Carpinus fangiana HOM05D003521 ORTHO05D000476 6.6e-07 60.8 670 24.0
Prupe.4G118900 Prunus persica HOM05D003521 ORTHO05D000476 2.5e-06 58.9 181 32.6
EL10Ac6g13433 Beta vulgaris HOM05D000200 ORTHO05D000262 5.6e-06 57.8 46 65.2


User provided reference genes

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