Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.005G014100 Phaseolus vulgaris HOM05D006212 ORTHO05D008245 9.1e-49 196.4 89 100.0
Phvul.007G139400 Phaseolus vulgaris HOM05D006212 ORTHO05D008245 2.6e-11 72.0 39 74.4
VMungo0720G1989 Vigna mungo HOM05D006212 ORTHO05D008245 2.6e-11 72.0 39 74.4
Glyma.10G197000 Glycine max HOM05D006212 ORTHO05D008245 3.4e-11 71.6 38 76.3
MSTRG.27497 Avicennia marina HOM05D006212 ORTHO05D008245 3.1e-09 65.1 57 56.1
Lj2A23T70 Lonicera japonica HOM05D006212 ORTHO05D008245 3.1e-09 65.1 38 71.1
CSS0046021 Camellia sinensis var. sinensis HOM05D006212 ORTHO05D008245 1.2e-08 63.2 33 81.8
GSVIVG01016183001 Vitis vinifera HOM05D006212 ORTHO05D008245 1.2e-08 63.2 38 65.8
Medtr1g090693 Medicago truncatula HOM05D006212 ORTHO05D008245 1.6e-08 62.8 38 71.1
Solyc11g008040.3 Solanum lycopersicum HOM05D006212 ORTHO05D008245 1.6e-08 62.8 38 65.8
vmacro10255 Vaccinium macrocarpon HOM05D006212 ORTHO05D008245 1.6e-08 62.8 38 65.8
arahy.Tifrunner.gnm1.ann1.KY2C4A Arachis hypogaea HOM05D006212 ORTHO05D008245 2.0e-08 62.4 34 73.5
Nitab4.5_0004987g0060 Nicotiana tabacum HOM05D006212 ORTHO05D008245 2.0e-08 62.4 38 65.8
Nitab4.5_0007723g0030 Nicotiana tabacum HOM05D006212 ORTHO05D008245 2.0e-08 62.4 38 65.8
Peaxi162Scf00982g00214 Petunia axillaris HOM05D006212 ORTHO05D008245 2.0e-08 62.4 38 65.8
Rhsim09G0146100 Rhododendron simsii HOM05D006212 ORTHO05D008245 2.0e-08 62.4 38 65.8
Ca_10444_v3 Cicer arietinum L. HOM05D006212 ORTHO05D008245 2.7e-08 62.0 38 71.1
Migut.F01920 Erythranthe guttata HOM05D006212 ORTHO05D008245 2.7e-08 62.0 32 81.2
Potri.010G229300 Populus trichocarpa HOM05D006212 ORTHO05D008245 3.5e-08 61.6 38 65.8
Dinv31247 Davidia involucrata HOM05D006212 ORTHO05D008245 5.9e-08 60.8 38 68.4
Duzib114G0641 Durio zibethinus HOM05D006212 ORTHO05D008245 5.9e-08 60.8 57 54.4
Lalb_Chr21g0312911 Lupinus albus HOM05D006212 ORTHO05D008245 7.8e-08 60.5 38 65.8
Hma1.2p1_0117F.1_g056390 Hydrangea macrophylla HOM05D006212 ORTHO05D008245 1.0e-07 60.1 38 65.8
SGA_v2.0_scaffold13G06519 Striga asiatica HOM05D006212 ORTHO05D008245 1.0e-07 60.1 38 65.8
Gohir.D05G290200 Gossypium hirsutum HOM05D006212 ORTHO05D008245 1.3e-07 59.7 36 72.2
Gorai.009G305300 Gossypium raimondii HOM05D006212 ORTHO05D008245 1.3e-07 59.7 38 65.8
TAR369G0250 Trochodendron aralioides HOM05D006212 ORTHO05D008245 1.3e-07 59.7 38 65.8
Ah.08g209700 Amaranthus hybridus HOM05D006212 ORTHO05D008245 1.7e-07 59.3 32 71.9
CAN.G459.26 Capsicum annuum HOM05D006212 ORTHO05D008245 1.7e-07 59.3 38 63.2
Sabra10G0177800 Salix brachista HOM05D006212 ORTHO05D008245 1.7e-07 59.3 32 75.0
Hund19796 Selenicereus undatus HOM05D006212 ORTHO05D008245 1.7e-07 59.3 32 78.1
MD01G1100100 Malus domestica HOM05D006212 ORTHO05D008245 2.3e-07 58.9 38 68.4
Prupe.2G205800 Prunus persica HOM05D006212 ORTHO05D008245 2.3e-07 58.9 38 68.4
TPR.G37858 Trifolium pratense HOM05D006212 ORTHO05D008245 2.3e-07 58.9 38 65.8
arahy.Tifrunner.gnm1.ann1.MYE0E1 Arachis hypogaea HOM05D006212 ORTHO05D008245 3.9e-07 58.2 33 75.8
QL08p053276 Quercus lobata HOM05D006212 ORTHO05D008245 3.9e-07 58.2 38 60.5
Sopen11g003910 Solanum pennellii HOM05D006212 ORTHO05D008245 3.9e-07 58.2 38 60.5
Lj5g0009189 Lotus japonicus HOM05D006212 ORTHO05D008245 5.0e-07 57.8 33 75.8
Psat6g172720 Pisum sativum HOM05D006212 ORTHO05D008245 5.0e-07 57.8 38 65.8
Oeu016301.1 Olea europaea HOM05D006212 ORTHO05D008245 6.6e-07 57.4 38 63.2
Thecc.10G087900 Theobroma cacao HOM05D006212 ORTHO05D008245 6.6e-07 57.4 32 71.9
TWI38G1180 Tripterygium wilfordii HOM05D006212 ORTHO05D008245 6.6e-07 57.4 38 63.2
ATR0329G025 Amborella trichopoda HOM05D006212 ORTHO05D008245 1.1e-06 56.6 38 55.3
Cfa001784 Carpinus fangiana HOM05D006212 ORTHO05D008245 1.1e-06 56.6 31 74.2
Haze_16761 Corylus avellana HOM05D006212 ORTHO05D008245 1.1e-06 56.6 31 74.2
FvH4_7g18370 Fragaria vesca HOM05D006212 ORTHO05D008245 1.1e-06 56.6 38 63.2
FAN03G1155 Fragaria x ananassa HOM05D006212 ORTHO05D008245 1.1e-06 56.6 38 63.2
FAN06G0602 Fragaria x ananassa HOM05D006212 ORTHO05D008245 1.1e-06 56.6 38 63.2
FAN06G2367 Fragaria x ananassa HOM05D006212 ORTHO05D008245 1.1e-06 56.6 38 63.2
FAN10G1668 Fragaria x ananassa HOM05D006212 ORTHO05D008245 1.1e-06 56.6 38 63.2
RcHm_v2.0_Chr1g0362181 Rosa chinensis HOM05D006212 ORTHO05D008245 1.1e-06 56.6 38 60.5
HanXRQChr14g0455751 Helianthus annuus HOM05D006212 ORTHO05D008245 1.5e-06 56.2 38 63.2
COL.COLO4_09860 Corchorus olitorius HOM05D006212 ORTHO05D008245 1.9e-06 55.8 31 74.2
ECA238G3613 Erigeron canadensis HOM05D006212 ORTHO05D008245 2.5e-06 55.5 32 75.0
Nn6g35226 Nelumbo nucifera HOM05D006212 ORTHO05D008245 2.5e-06 55.5 38 63.2
SalBow4G3289 Salvia bowleyana HOM05D006212 ORTHO05D008245 2.5e-06 55.5 38 63.2
Sed0020526 Sechium edule HOM05D006212 ORTHO05D008245 2.5e-06 55.5 38 60.5
DCAR_019069 Daucus carota HOM05D006212 ORTHO05D008245 4.3e-06 54.7 33 66.7
Cc02_g10690 Coffea canephora HOM05D006212 ORTHO05D008245 5.6e-06 54.3 31 67.7
AT5G04360 Arabidopsis thaliana HOM05D006212 ORTHO05D008245 7.3e-06 53.9 38 55.3
CARHR208930 Cardamine hirsuta HOM05D006212 ORTHO05D008245 7.3e-06 53.9 38 52.6
PSO339G2669 Papaver somniferum HOM05D006212 ORTHO05D008245 7.3e-06 53.9 32 71.9
THA.LOC104816441 Tarenaya hassleriana HOM05D006212 ORTHO05D008245 7.3e-06 53.9 38 55.3
Atru.chr12.885 Acer truncatum HOM05D006212 ORTHO05D008245 9.5e-06 53.5 31 77.4


User provided reference genes

Program Settings