Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G083000 Phaseolus vulgaris HOM05D000117 ORTHO05D307642 1.4e-65 252.7 120 100.0
VMungo0331G1495 Vigna mungo HOM05D000117 ORTHO05D000070 1.1e-20 103.6 134 44.0
Phvul.010G145000 Phaseolus vulgaris HOM05D000117 ORTHO05D000070 1.3e-18 96.7 134 42.5
Glyma.07G015200 Glycine max HOM05D000117 ORTHO05D000070 2.5e-17 92.4 130 43.1
Glyma.08G200700 Glycine max HOM05D000117 ORTHO05D000070 4.2e-17 91.7 130 42.3
Psat4g197240 Pisum sativum HOM05D000117 ORTHO05D000070 9.1e-12 73.9 132 35.6
Actinidia32102 Actinidia chinensis HOM05D000117 ORTHO05D000070 3.5e-11 72.0 118 35.6
TPR.G6600 Trifolium pratense HOM05D000117 ORTHO05D000070 1.3e-10 70.1 120 38.3
Cfa003641 Carpinus fangiana HOM05D000117 ORTHO05D000070 5.0e-10 68.2 119 37.0
Aqoxy7G01404 Aquilegia oxysepala HOM05D000117 ORTHO05D000070 1.1e-09 67.0 112 35.7
Dinv30433 Davidia involucrata HOM05D000117 ORTHO05D000070 1.1e-09 67.0 122 36.1
Actinidia21718 Actinidia chinensis HOM05D000117 ORTHO05D000070 1.5e-09 66.6 122 35.2
Ca_01168_v3 Cicer arietinum L. HOM05D000117 ORTHO05D000070 1.5e-09 66.6 113 36.3
Lj3g0015366 Lotus japonicus HOM05D000117 ORTHO05D000070 1.5e-09 66.6 113 36.3
MSTRG.4753 Avicennia marina HOM05D000117 ORTHO05D000070 1.9e-09 66.2 120 34.2
HanXRQChr09g0275661 Helianthus annuus HOM05D000117 ORTHO05D000070 2.5e-09 65.9 124 33.9
Rhsim08G0228000 Rhododendron simsii HOM05D000117 ORTHO05D000070 2.5e-09 65.9 111 36.0
Haze_15853 Corylus avellana HOM05D000117 ORTHO05D000070 3.3e-09 65.5 119 35.3
Medtr8g014520 Medicago truncatula HOM05D000117 ORTHO05D000070 3.3e-09 65.5 115 36.5
VMungo1080G1330 Vigna mungo HOM05D000117 ORTHO05D000070 3.3e-09 65.5 119 36.1
Lj5C52T6 Lonicera japonica HOM05D000117 ORTHO05D000070 4.2e-09 65.1 117 35.9
SalBow2G0550 Salvia bowleyana HOM05D000117 ORTHO05D000070 5.5e-09 64.7 117 35.9
TWI18G0469 Tripterygium wilfordii HOM05D000117 ORTHO05D000070 5.5e-09 64.7 109 37.6
vmacro17013 Vaccinium macrocarpon HOM05D000117 ORTHO05D000070 5.5e-09 64.7 114 36.0
CiPaw.01G231000 Carya illinoinensis HOM05D000117 ORTHO05D000070 7.2e-09 64.3 115 34.8
CiPaw.02G145500 Carya illinoinensis HOM05D000117 ORTHO05D000070 7.2e-09 64.3 118 33.9
Lalb_Chr14g0373011 Lupinus albus HOM05D000117 ORTHO05D000070 7.2e-09 64.3 121 35.5
Dinv27923 Davidia involucrata HOM05D000117 ORTHO05D000070 9.5e-09 63.9 115 34.8
TWI75G0460 Tripterygium wilfordii HOM05D000117 ORTHO05D000070 9.5e-09 63.9 115 33.9
vmacro18848 Vaccinium macrocarpon HOM05D000117 ORTHO05D000070 9.5e-09 63.9 114 36.0
Actinidia39135 Actinidia chinensis HOM05D000117 ORTHO05D000070 1.2e-08 63.5 115 34.8
SGA_v2.0_scaffold68G22944 Striga asiatica HOM05D000117 ORTHO05D000070 1.2e-08 63.5 111 37.8
Ca_23265_v3 Cicer arietinum L. HOM05D000117 ORTHO05D000070 1.6e-08 63.2 122 35.2
Ca_23274_v3 Cicer arietinum L. HOM05D000117 ORTHO05D000070 1.6e-08 63.2 122 35.2
Oeu017125.2 Olea europaea HOM05D000117 ORTHO05D000070 1.6e-08 63.2 118 39.0
Oeu026770.1 Olea europaea HOM05D000117 ORTHO05D000070 1.6e-08 63.2 111 34.2
QL05p019775 Quercus lobata HOM05D000117 ORTHO05D000070 1.6e-08 63.2 122 35.2
SalBow7G4256 Salvia bowleyana HOM05D000117 ORTHO05D000070 1.6e-08 63.2 112 36.6
Glyma.15G020300 Glycine max HOM05D000117 ORTHO05D000070 2.1e-08 62.8 120 35.0
Phvul.005G165600 Phaseolus vulgaris HOM05D000117 ORTHO05D000070 2.1e-08 62.8 119 35.3
TAR636G0651 Trochodendron aralioides HOM05D000117 ORTHO05D000070 2.1e-08 62.8 108 35.2
Medtr2g100780 Medicago truncatula HOM05D000117 ORTHO05D000070 2.8e-08 62.4 118 36.4
CSS0000357 Camellia sinensis var. sinensis HOM05D000117 ORTHO05D000070 3.6e-08 62.0 122 31.1
CSS0030573 Camellia sinensis var. sinensis HOM05D000117 ORTHO05D000070 3.6e-08 62.0 112 34.8
ECA232G3647 Erigeron canadensis HOM05D000117 ORTHO05D000070 3.6e-08 62.0 120 36.7
MBI01_g10129_MAGBIO Magnolia biondii HOM05D000117 ORTHO05D000070 3.6e-08 62.0 105 38.1
MBI04_g34405_MAGBIO Magnolia biondii HOM05D000117 ORTHO05D000070 3.6e-08 62.0 127 32.3
Manes.11G033100 Manihot esculenta HOM05D000117 ORTHO05D000070 3.6e-08 62.0 115 31.3
CSS0014643 Camellia sinensis var. sinensis HOM05D000117 ORTHO05D000070 4.7e-08 61.6 114 34.2
Cc04_g02510 Coffea canephora HOM05D000117 ORTHO05D000070 4.7e-08 61.6 112 33.9
DCAR_016187 Daucus carota HOM05D000117 ORTHO05D000070 4.7e-08 61.6 111 34.2
Ah.01g005770 Amaranthus hybridus HOM05D000117 ORTHO05D000070 6.1e-08 61.2 130 35.4
ATR0705G043 Amborella trichopoda HOM05D000117 ORTHO05D000070 6.1e-08 61.2 103 35.9
Eucgr.F03080 Eucalyptus grandis HOM05D000117 ORTHO05D000070 6.1e-08 61.2 120 34.2
Glyma.13G354100 Glycine max HOM05D000117 ORTHO05D000070 6.1e-08 61.2 120 34.2
MD09G1202300 Malus domestica HOM05D000117 ORTHO05D000070 6.1e-08 61.2 118 36.4
Oeu002532.1 Olea europaea HOM05D000117 ORTHO05D000070 6.1e-08 61.2 113 32.7
PSO210G5400 Papaver somniferum HOM05D000117 ORTHO05D000070 6.1e-08 61.2 93 39.8
Rhsim12G0203100 Rhododendron simsii HOM05D000117 ORTHO05D000070 6.1e-08 61.2 115 33.9
SHI11109 Sapria himalayana HOM05D000117 ORTHO05D000070 6.1e-08 61.2 100 40.0
TPR.G35428 Trifolium pratense HOM05D000117 ORTHO05D000070 6.1e-08 61.2 109 35.8
Zm00001eb153660 Zea mays HOM05D000117 ORTHO05D000070 6.1e-08 61.2 110 39.1
MSTRG.9490 Avicennia marina HOM05D000117 ORTHO05D000070 8.0e-08 60.8 116 31.9
EL10Ac9g21193 Beta vulgaris HOM05D000117 ORTHO05D000070 8.0e-08 60.8 116 34.5
Nitab4.5_0011529g0020 Nicotiana tabacum HOM05D000117 ORTHO05D000070 8.0e-08 60.8 119 37.0
Solyc03g121060.4 Solanum lycopersicum HOM05D000117 ORTHO05D000070 8.0e-08 60.8 124 33.1
Aa31LG10G2860 Aethionema arabicum HOM05D000117 ORTHO05D000070 1.0e-07 60.5 97 40.2
AUR62031929 Chenopodium quinoa HOM05D000117 ORTHO05D000070 1.0e-07 60.5 113 33.6
Lj9C513T11 Lonicera japonica HOM05D000117 ORTHO05D000070 1.0e-07 60.5 112 33.0
Lj3g0026810 Lotus japonicus HOM05D000117 ORTHO05D000070 1.0e-07 60.5 116 35.3
Sopen03g039890 Solanum pennellii HOM05D000117 ORTHO05D000070 1.0e-07 60.5 123 33.3
AUR62022214 Chenopodium quinoa HOM05D000117 ORTHO05D000070 1.4e-07 60.1 115 34.8
Hma1.2p1_0430F.1_g151350 Hydrangea macrophylla HOM05D000117 ORTHO05D000070 1.4e-07 60.1 123 36.6
SGA_v2.0_scaffold4G02027 Striga asiatica HOM05D000117 ORTHO05D000070 1.4e-07 60.1 105 38.1
Manes.04G134400 Manihot esculenta HOM05D000117 ORTHO05D000070 1.8e-07 59.7 106 36.8
PSO063G3562 Papaver somniferum HOM05D000117 ORTHO05D000070 1.8e-07 59.7 112 37.5
Psat5g295600 Pisum sativum HOM05D000117 ORTHO05D000070 1.8e-07 59.7 112 33.9
Potri.001G190300 Populus trichocarpa HOM05D000117 ORTHO05D000070 1.8e-07 59.7 112 32.1
PGR102G2122 Punica granatum HOM05D000117 ORTHO05D000070 1.8e-07 59.7 110 35.5
Sed0002899 Sechium edule HOM05D000117 ORTHO05D000070 1.8e-07 59.7 106 36.8
PGSC0003DMG400002608 Solanum tuberosum HOM05D000117 ORTHO05D000070 1.8e-07 59.7 114 36.0
Thecc.06G100500 Theobroma cacao HOM05D000117 ORTHO05D000070 1.8e-07 59.7 110 34.5
TAR626G1059 Trochodendron aralioides HOM05D000117 ORTHO05D000070 1.8e-07 59.7 110 34.5
CSS0012034 Camellia sinensis var. sinensis HOM05D000117 ORTHO05D000070 2.3e-07 59.3 113 31.9
CAN.G1143.17 Capsicum annuum HOM05D000117 ORTHO05D000070 2.3e-07 59.3 114 34.2
CsaV3_3G023550 Cucumis sativus L. HOM05D000117 ORTHO05D000070 2.3e-07 59.3 107 39.3
Dinv23391 Davidia involucrata HOM05D000117 ORTHO05D000070 2.3e-07 59.3 107 35.5
Duzib192G0610 Durio zibethinus HOM05D000117 ORTHO05D000070 2.3e-07 59.3 116 33.6
Lsat_1_v5_gn_4_98481 Lactuca sativa HOM05D000117 ORTHO05D000070 2.3e-07 59.3 102 38.2
MD13G1222200 Malus domestica HOM05D000117 ORTHO05D000070 2.3e-07 59.3 117 29.9
GSVIVG01016972001 Vitis vinifera HOM05D000117 ORTHO05D000070 2.3e-07 59.3 115 33.0
Gohir.A10G065200 Gossypium hirsutum HOM05D000117 ORTHO05D000070 3.0e-07 58.9 123 31.7
Gohir.D10G066700 Gossypium hirsutum HOM05D000117 ORTHO05D000070 3.0e-07 58.9 123 31.7
Gorai.011G070800 Gossypium raimondii HOM05D000117 ORTHO05D000070 3.0e-07 58.9 123 31.7
Sabra01G0151200 Salix brachista HOM05D000117 ORTHO05D000070 3.0e-07 58.9 116 35.3
Hund07603 Selenicereus undatus HOM05D000117 ORTHO05D000070 3.0e-07 58.9 119 36.1
Ah.01g017370 Amaranthus hybridus HOM05D000117 ORTHO05D000070 4.0e-07 58.5 103 36.9
PSO832G4331 Papaver somniferum HOM05D000117 ORTHO05D000070 4.0e-07 58.5 115 36.5
TWI12G0494 Tripterygium wilfordii HOM05D000117 ORTHO05D000070 4.0e-07 58.5 113 34.5
unitig_85.g27209 Utricularia gibba HOM05D000117 ORTHO05D000070 4.0e-07 58.5 108 36.1
arahy.Tifrunner.gnm1.ann1.F330XL Arachis hypogaea HOM05D000117 ORTHO05D000070 5.2e-07 58.2 114 35.1
CANSAT56G3363 Cannabis sativa HOM05D000117 ORTHO05D000070 5.2e-07 58.2 121 36.4
Duzib160G0730 Durio zibethinus HOM05D000117 ORTHO05D000070 5.2e-07 58.2 117 35.0
Migut.D00989 Erythranthe guttata HOM05D000117 ORTHO05D000070 5.2e-07 58.2 113 31.9
FAN09G4143 Fragaria x ananassa HOM05D000117 ORTHO05D000070 5.2e-07 58.2 114 36.0
Hma1.2p1_0049F.1_g028320 Hydrangea macrophylla HOM05D000117 ORTHO05D000070 5.2e-07 58.2 99 35.4
Lj7A698G74 Lonicera japonica HOM05D000117 ORTHO05D000070 5.2e-07 58.2 117 31.6
Ciclev10026076m.g Citrus clementina HOM05D000117 ORTHO05D000070 6.8e-07 57.8 114 35.1
ECA233G3226 Erigeron canadensis HOM05D000117 ORTHO05D000070 6.8e-07 57.8 106 32.1
RcHm_v2.0_Chr2g0140681 Rosa chinensis HOM05D000117 ORTHO05D000070 6.8e-07 57.8 113 34.5
AT3G16500 Arabidopsis thaliana HOM05D000117 ORTHO05D000070 8.9e-07 57.4 98 38.8
Haze_11465 Corylus avellana HOM05D000117 ORTHO05D000070 8.9e-07 57.4 104 33.7
Potri.018G057000 Populus trichocarpa HOM05D000117 ORTHO05D000070 8.9e-07 57.4 99 33.3
TAR624G0762 Trochodendron aralioides HOM05D000117 ORTHO05D000070 8.9e-07 57.4 105 36.2
arahy.Tifrunner.gnm1.ann1.QSK9AI Arachis hypogaea HOM05D000117 ORTHO05D000070 1.2e-06 57.0 125 31.2
Cfa014788 Carpinus fangiana HOM05D000117 ORTHO05D000070 1.2e-06 57.0 104 33.7
DCAR_026353 Daucus carota HOM05D001868 ORTHO05D003985 1.2e-06 57.0 133 32.3
Sed0002790 Sechium edule HOM05D000117 ORTHO05D000070 1.2e-06 57.0 105 37.1
THA.LOC104817948 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 1.2e-06 57.0 100 34.0
Actinidia09007 Actinidia chinensis HOM05D000117 ORTHO05D000070 1.5e-06 56.6 114 33.3
CDE05G3067 Ceratophyllum demersum HOM05D000117 ORTHO05D000070 1.5e-06 56.6 107 32.7
ClCG07G013340 Citrullus lanatus HOM05D000117 ORTHO05D000070 1.5e-06 56.6 110 36.4
FAN02G0229 Fragaria x ananassa HOM05D000117 ORTHO05D000070 1.5e-06 56.6 121 33.9
MBI10_g45542_MAGBIO Magnolia biondii HOM05D000117 ORTHO05D000070 1.5e-06 56.6 108 33.3
Potri.003G048100 Populus trichocarpa HOM05D000117 ORTHO05D000070 1.5e-06 56.6 114 32.5
Potri.006G236200 Populus trichocarpa HOM05D000117 ORTHO05D000070 1.5e-06 56.6 107 34.6
arahy.Tifrunner.gnm1.ann1.X1FQXP Arachis hypogaea HOM05D000117 ORTHO05D000070 2.0e-06 56.2 124 31.5
MSTRG.18915 Avicennia marina HOM05D000117 ORTHO05D000070 2.0e-06 56.2 115 28.7
MSTRG.22636 Avicennia marina HOM05D000117 ORTHO05D000070 2.0e-06 56.2 115 28.7
FAN14G5303 Fragaria x ananassa HOM05D000117 ORTHO05D000070 2.0e-06 56.2 122 33.6
Gohir.D06G198200 Gossypium hirsutum HOM05D000117 ORTHO05D000070 2.0e-06 56.2 103 37.9
MD15G1090600 Malus domestica HOM05D000117 ORTHO05D000070 2.0e-06 56.2 102 34.3
PSO210G0548 Papaver somniferum HOM05D000117 ORTHO05D000070 2.0e-06 56.2 101 38.6
Sc12g0010150 Simmondsia chinensis HOM05D000117 ORTHO05D000070 2.0e-06 56.2 102 38.2
THA.LOC104810544 Tarenaya hassleriana HOM05D000117 ORTHO05D000070 2.0e-06 56.2 100 35.0
arahy.Tifrunner.gnm1.ann1.5RC9P7 Arachis hypogaea HOM05D000117 ORTHO05D000070 2.6e-06 55.8 113 34.5
Thhalv10011713m.g Eutrema salsugineum HOM05D000117 ORTHO05D000070 2.6e-06 55.8 97 37.1
FAN05G5638 Fragaria x ananassa HOM05D000117 ORTHO05D000070 2.6e-06 55.8 101 34.7
FAN17G2165 Fragaria x ananassa HOM05D000117 ORTHO05D000070 2.6e-06 55.8 114 31.6
Prupe.3G058600 Prunus persica HOM05D000117 ORTHO05D000070 2.6e-06 55.8 111 36.0
Carub.0001s4088 Capsella rubella HOM05D000117 ORTHO05D000070 3.4e-06 55.5 96 39.6
CARHR187540 Cardamine hirsuta HOM05D000117 ORTHO05D000070 3.4e-06 55.5 107 32.7
Migut.I00893 Erythranthe guttata HOM05D000117 ORTHO05D000070 3.4e-06 55.5 115 33.0
FAN22G1514 Fragaria x ananassa HOM05D000117 ORTHO05D000070 3.4e-06 55.5 104 32.7
Gorai.010G231100 Gossypium raimondii HOM05D000117 ORTHO05D000070 3.4e-06 55.5 101 35.6
HanXRQChr01g0023031 Helianthus annuus HOM05D000117 ORTHO05D000070 3.4e-06 55.5 112 33.0
MD16G1227100 Malus domestica HOM05D000117 ORTHO05D000070 3.4e-06 55.5 115 31.3
Nn6g35328 Nelumbo nucifera HOM05D000117 ORTHO05D000070 3.4e-06 55.5 104 35.6
AL1G59990 Arabidopsis lyrata HOM05D000117 ORTHO05D000070 4.4e-06 55.1 98 39.8
AL3G29320 Arabidopsis lyrata HOM05D000117 ORTHO05D000070 4.4e-06 55.1 98 38.8
BcaC08g43356 Brassica carinata HOM05D000117 ORTHO05D000070 4.4e-06 55.1 98 37.8
A06p02150 Brassica napus HOM05D000117 ORTHO05D000070 4.4e-06 55.1 114 36.0
BraA06t23426Z Brassica rapa HOM05D000117 ORTHO05D000070 4.4e-06 55.1 114 36.0
CARHR091710 Cardamine hirsuta HOM05D000117 ORTHO05D000070 4.4e-06 55.1 104 36.5
FvH4_4g04700 Fragaria vesca HOM05D000117 ORTHO05D000070 4.4e-06 55.1 112 32.1
FAN12G1248 Fragaria x ananassa HOM05D000117 ORTHO05D000070 4.4e-06 55.1 112 32.1
Lalb_Chr22g0351591 Lupinus albus HOM05D000117 ORTHO05D000070 4.4e-06 55.1 114 32.5
MD17G1183500 Malus domestica HOM05D000117 ORTHO05D000070 4.4e-06 55.1 108 36.1
Os01g0741900 Oryza sativa ssp. japonica HOM05D000117 ORTHO05D000070 4.4e-06 55.1 109 33.0
Prupe.1G049200 Prunus persica HOM05D000117 ORTHO05D000070 4.4e-06 55.1 115 30.4
Prupe.1G445000 Prunus persica HOM05D000117 ORTHO05D000070 4.4e-06 55.1 114 32.5
Sp3g14850 Schrenkiella parvula HOM05D000117 ORTHO05D000070 4.4e-06 55.1 104 36.5
Hund00697 Selenicereus undatus HOM05D000185 ORTHO05D000070 4.4e-06 55.1 132 32.6
BcaB02g11034 Brassica carinata HOM05D000117 ORTHO05D000070 5.7e-06 54.7 113 33.6
CiPaw.02G106500 Carya illinoinensis HOM05D000117 ORTHO05D000070 5.7e-06 54.7 128 29.7
COL.COLO4_30518 Corchorus olitorius HOM05D000117 ORTHO05D000070 5.7e-06 54.7 106 34.9
Duzib235G0441 Durio zibethinus HOM05D000117 ORTHO05D000070 5.7e-06 54.7 110 30.9
Potri.010G065200 Populus trichocarpa HOM05D000117 ORTHO05D000070 5.7e-06 54.7 96 35.4
QL12p041001 Quercus lobata HOM05D000117 ORTHO05D000070 5.7e-06 54.7 99 33.3
Atru.chr7.2055 Acer truncatum HOM05D000117 ORTHO05D000070 7.5e-06 54.3 115 33.0
Aa31LG8G3630 Aethionema arabicum HOM05D000117 ORTHO05D000070 7.5e-06 54.3 97 35.1
C06p07200 Brassica napus HOM05D000117 ORTHO05D000070 7.5e-06 54.3 98 37.8
BolC6t35812H Brassica oleracea HOM05D000117 ORTHO05D000070 7.5e-06 54.3 98 37.8
Duzib168G1346 Durio zibethinus HOM05D000117 ORTHO05D000070 7.5e-06 54.3 100 34.0
ECA248G2747 Erigeron canadensis HOM05D000117 ORTHO05D000070 7.5e-06 54.3 112 30.4
Eucgr.H02914 Eucalyptus grandis HOM05D000117 ORTHO05D000070 7.5e-06 54.3 98 31.6
Gohir.A06G189800 Gossypium hirsutum HOM05D000117 ORTHO05D000070 7.5e-06 54.3 101 35.6
HPP92_024451 Vanilla planifolia HOM05D000117 ORTHO05D000070 7.5e-06 54.3 105 34.3
Zm00001eb239550 Zea mays HOM05D000117 ORTHO05D000070 7.5e-06 54.3 101 34.7
FAN20G1667 Fragaria x ananassa HOM05D000117 ORTHO05D000070 9.8e-06 53.9 106 37.7
Gohir.A05G129300 Gossypium hirsutum HOM05D000117 ORTHO05D000070 9.8e-06 53.9 99 33.3
Gorai.011G180100 Gossypium raimondii HOM05D000117 ORTHO05D000070 9.8e-06 53.9 118 29.7
HanXRQChr07g0191361 Helianthus annuus HOM05D000117 ORTHO05D000070 9.8e-06 53.9 98 36.7
GSVIVG01028432001 Vitis vinifera HOM05D000117 ORTHO05D000070 9.8e-06 53.9 115 28.7
GSVIVG01035295001 Vitis vinifera HOM05D000117 ORTHO05D000070 9.8e-06 53.9 102 37.3


User provided reference genes

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