Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 5.0e-126 454.5 242 100.0
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 2.1e-108 396.0 244 85.2
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 2.3e-99 365.9 248 83.5
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 9.9e-98 360.5 247 81.8
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 2.7e-87 325.9 205 82.0
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 3.5e-87 325.5 250 73.2
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 7.3e-85 317.8 246 67.9
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 9.6e-85 317.4 240 70.4
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 1.3e-84 317.0 242 70.2
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 1.6e-84 316.6 243 76.1
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 1.1e-80 303.9 250 70.8
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 3.9e-78 295.4 216 70.4
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 4.0e-75 285.4 210 67.1
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 3.4e-74 282.3 215 66.5
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 1.3e-73 280.4 215 66.5
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 1.7e-73 280.0 212 67.0
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 4.9e-73 278.5 157 87.9
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 4.9e-73 278.5 205 73.7
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 1.4e-72 276.9 249 58.2
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 1.4e-72 276.9 202 68.3
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 1.4e-72 276.9 213 64.8
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 1.9e-72 276.6 211 66.8
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 2.4e-72 276.2 214 65.4
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 5.4e-72 275.0 206 66.5
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 1.6e-71 273.5 217 65.4
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 1.6e-71 273.5 210 67.1
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 1.6e-71 273.5 214 65.0
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 1.6e-71 273.5 214 65.0
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 1.6e-71 273.5 214 65.0
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 2.1e-71 273.1 214 65.4
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 2.1e-71 273.1 236 60.6
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 4.6e-71 271.9 255 57.6
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 4.6e-71 271.9 211 65.9
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 4.6e-71 271.9 211 66.4
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 6.0e-71 271.6 213 65.3
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 6.0e-71 271.6 247 57.9
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 1.0e-70 270.8 213 64.8
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 1.8e-70 270.0 214 64.0
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 1.8e-70 270.0 248 58.9
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 3.0e-70 269.2 254 56.3
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 3.9e-70 268.9 213 63.4
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 8.7e-70 267.7 216 62.5
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 1.5e-69 266.9 213 63.8
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 1.5e-69 266.9 214 63.6
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 2.5e-69 266.2 215 63.7
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 3.3e-69 265.8 214 63.6
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 4.3e-69 265.4 219 64.4
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 5.6e-69 265.0 217 64.1
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 9.6e-69 264.2 207 65.2
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 1.3e-68 263.8 238 58.0
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 1.6e-68 263.5 209 65.1
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 2.1e-68 263.1 209 63.6
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 2.8e-68 262.7 215 64.2
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 3.7e-68 262.3 216 61.6
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 1.1e-67 260.8 212 62.3
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 1.4e-67 260.4 219 62.6
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 1.4e-67 260.4 242 57.4
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 1.4e-67 260.4 209 64.1
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 1.8e-67 260.0 216 62.0
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 2.4e-67 259.6 213 61.0
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 2.4e-67 259.6 213 61.0
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 5.3e-67 258.5 211 63.0
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 6.9e-67 258.1 206 64.6
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 6.9e-67 258.1 213 62.0
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 9.0e-67 257.7 216 60.2
Dinv22813 Davidia involucrata HOM05D005088 ORTHO05D006914 9.0e-67 257.7 199 65.8
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 1.5e-66 256.9 211 62.6
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.0e-66 256.5 208 62.5
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.6e-66 256.1 205 62.9
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 3.4e-66 255.8 214 63.1
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 4.5e-66 255.4 199 63.8
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 4.9e-65 251.9 205 62.0
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 4.9e-65 251.9 199 63.3
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 6.5e-65 251.5 208 60.6
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 6.5e-65 251.5 208 60.6
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 1.1e-64 250.8 206 60.7
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 1.1e-64 250.8 158 75.9
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 1.4e-64 250.4 208 60.1
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 2.5e-64 249.6 209 60.8
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 2.5e-64 249.6 217 59.0
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 3.2e-64 249.2 238 57.1
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 4.2e-64 248.8 201 63.2
PGSC0003DMG400010550 Solanum tuberosum HOM05D005088 ORTHO05D006914 7.1e-64 248.1 199 64.8
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 9.3e-64 247.7 157 77.1
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 1.2e-63 247.3 211 59.7
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 1.2e-63 247.3 211 60.7
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 2.1e-63 246.5 238 55.5
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 4.6e-63 245.4 220 57.7
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 7.9e-63 244.6 210 61.9
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 2.3e-62 243.0 240 52.1
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 3.9e-62 242.3 210 61.0
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 8.7e-62 241.1 157 74.5
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 1.1e-61 240.7 205 60.5
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 1.5e-61 240.4 157 72.0
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 2.5e-61 239.6 232 54.3
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 4.3e-61 238.8 222 55.4
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 4.3e-61 238.8 211 59.2
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 4.1e-59 232.3 215 55.3
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 4.1e-59 232.3 217 54.8
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 6.9e-59 231.5 198 59.6
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 1.5e-58 230.3 249 49.4
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 2.6e-58 229.6 215 54.9
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 2.6e-58 229.6 217 54.4
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 1.3e-57 227.3 217 52.5
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 6.5e-57 224.9 167 66.5
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 2.5e-56 223.0 216 51.9
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 4.2e-56 222.2 223 49.3
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 7.2e-56 221.5 216 53.2
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 4.6e-55 218.8 225 51.1
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 6.7e-54 214.9 206 53.4
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 1.5e-53 213.8 243 46.9
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 4.3e-53 212.2 162 66.0
TAR629G0436 Trochodendron aralioides HOM05D005088 ORTHO05D006914 3.7e-52 209.1 170 63.5
HPP92_010645 Vanilla planifolia HOM05D005088 ORTHO05D006914 3.7e-52 209.1 193 54.9
COL.COLO4_29189 Corchorus olitorius HOM05D005088 ORTHO05D006914 6.9e-51 204.9 166 66.3
Solyc01g112010.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 7.9e-47 191.4 165 62.4
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 2.5e-45 186.4 219 47.9
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 1.7e-44 183.7 156 57.1
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 5.5e-40 168.7 137 62.8
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 9.4e-40 167.9 155 50.3
SMO347G0658 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 2.3e-38 163.3 162 50.6
AUR62029179 Chenopodium quinoa HOM05D005088 ORTHO05D006914 1.3e-36 157.5 114 65.8
MD09G1021200 Malus domestica HOM05D005088 ORTHO05D006914 3.2e-32 142.9 118 61.0
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 8.0e-31 138.3 217 41.0
PRCOL_00000286 Prasinoderma coloniale HOM05D005088 ORTHO05D006914 4.4e-29 132.5 171 40.9
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 2.8e-28 129.8 135 52.6
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 4.1e-27 125.9 84 69.0
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 1.9e-24 117.1 96 57.3
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 7.2e-24 115.2 82 62.2
BcaB02g08365 Brassica carinata HOM05D005088 ORTHO05D006914 6.1e-23 112.1 184 41.3
Sed0009105 Sechium edule HOM05D005088 ORTHO05D006914 8.0e-23 111.7 147 47.6
Oeu060752.1 Olea europaea HOM05D005088 ORTHO05D006914 2.0e-21 107.1 126 46.8
Manes.17G110201 Manihot esculenta HOM05D005088 ORTHO05D006914 8.3e-12 75.1 39 82.1
SMO235G0038 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 1.6e-10 70.9 84 47.6
BolC4t25202H Brassica oleracea HOM05D005088 ORTHO05D017652 4.0e-06 56.2 179 27.9


User provided reference genes

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