Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 4.3e-101 371.3 185 100.0
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 7.5e-98 360.5 185 96.2
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 9.8e-98 360.1 185 96.2
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 1.5e-93 346.3 185 91.9
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 5.8e-90 334.3 182 90.1
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 3.2e-88 328.6 178 89.9
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 1.1e-85 320.1 183 85.8
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 9.0e-75 283.9 176 77.8
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 1.5e-74 283.1 185 72.4
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 4.5e-74 281.6 185 72.4
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 3.8e-73 278.5 185 71.4
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 3.8e-73 278.5 185 70.8
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 3.8e-73 278.5 185 70.3
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 3.8e-73 278.5 185 70.8
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 4.9e-73 278.1 185 70.3
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 6.4e-73 277.7 185 71.4
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 8.4e-73 277.3 185 71.4
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 8.4e-73 277.3 185 70.3
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 8.4e-73 277.3 183 72.1
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 8.4e-73 277.3 185 70.8
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 8.4e-73 277.3 185 70.8
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 1.4e-72 276.6 185 71.4
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 1.4e-72 276.6 185 71.4
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 1.4e-72 276.6 185 71.4
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 1.4e-72 276.6 183 72.1
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 1.4e-72 276.6 185 71.9
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 1.9e-72 276.2 183 71.6
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 2.4e-72 275.8 185 71.9
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 3.2e-72 275.4 185 70.8
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 3.2e-72 275.4 185 70.8
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 3.2e-72 275.4 185 70.3
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 5.4e-72 274.6 185 70.3
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 5.4e-72 274.6 185 71.4
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.4e-72 274.6 185 70.3
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 5.4e-72 274.6 185 70.3
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 9.3e-72 273.9 185 69.2
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 1.2e-71 273.5 181 70.7
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 2.7e-71 272.3 185 69.2
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 4.6e-71 271.6 185 69.2
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 1.0e-70 270.4 185 69.2
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 1.0e-70 270.4 185 68.6
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 1.0e-70 270.4 178 71.3
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.0e-70 270.4 178 71.3
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 1.8e-70 269.6 184 71.2
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.3e-70 269.2 185 69.2
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 2.3e-70 269.2 186 70.4
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 3.0e-70 268.9 185 70.3
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 3.0e-70 268.9 185 69.2
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 3.9e-70 268.5 185 67.0
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 3.9e-70 268.5 185 70.3
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.1e-70 268.1 183 69.9
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 5.1e-70 268.1 183 69.9
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 6.7e-70 267.7 183 69.9
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 6.7e-70 267.7 181 70.7
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 8.7e-70 267.3 185 68.1
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 8.7e-70 267.3 185 68.1
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 8.7e-70 267.3 186 69.9
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.1e-69 266.9 185 68.1
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.1e-69 266.9 185 68.1
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 1.5e-69 266.5 185 69.2
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 1.5e-69 266.5 178 68.5
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 2.5e-69 265.8 185 68.1
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 2.5e-69 265.8 183 69.4
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.5e-69 265.8 185 67.6
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 3.3e-69 265.4 182 68.1
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 3.3e-69 265.4 183 69.4
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 4.3e-69 265.0 185 69.7
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 4.3e-69 265.0 178 74.2
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 4.3e-69 265.0 180 72.2
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 7.4e-69 264.2 183 68.9
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 1.3e-68 263.5 185 68.1
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.3e-68 263.5 181 67.4
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.3e-68 263.5 182 69.8
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 1.6e-68 263.1 185 67.6
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.1e-68 262.7 185 67.6
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 2.8e-68 262.3 185 69.2
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 3.6e-68 261.9 183 67.8
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 3.6e-68 261.9 185 68.1
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 6.2e-68 261.2 185 67.6
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 6.2e-68 261.2 185 67.6
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 6.2e-68 261.2 178 68.5
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 8.1e-68 260.8 185 65.4
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 1.1e-67 260.4 180 72.8
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 1.8e-67 259.6 183 68.3
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.8e-67 259.6 183 67.2
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 2.4e-67 259.2 183 67.8
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 3.1e-67 258.8 185 68.1
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 4.0e-67 258.5 183 65.6
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 6.9e-67 257.7 185 65.4
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 6.9e-67 257.7 178 67.4
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 6.9e-67 257.7 185 65.4
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 1.5e-66 256.5 184 70.1
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.0e-66 256.1 185 64.9
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 4.5e-66 255.0 183 63.4
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 5.8e-66 254.6 185 65.4
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 5.8e-66 254.6 183 65.6
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 1.3e-65 253.4 179 68.2
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.7e-65 253.1 181 67.4
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 2.2e-65 252.7 183 66.1
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 2.2e-65 252.7 183 66.1
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 2.2e-65 252.7 183 66.1
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 2.9e-65 252.3 186 63.4
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 4.9e-65 251.5 185 64.9
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 4.9e-65 251.5 183 65.0
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 6.4e-65 251.1 181 66.9
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 8.4e-65 250.8 184 65.2
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.1e-64 250.4 183 65.0
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 2.4e-64 249.2 185 63.2
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 5.5e-64 248.1 185 63.8
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 9.3e-64 247.3 181 64.1
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 1.2e-63 246.9 183 64.5
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 1.2e-63 246.9 183 64.5
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.2e-63 246.9 185 64.3
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 2.7e-63 245.7 185 63.2
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 2.7e-63 245.7 179 63.7
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 4.6e-63 245.0 181 66.3
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 6.0e-63 244.6 194 63.9
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 7.9e-63 244.2 180 62.8
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.0e-62 243.8 186 64.0
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.3e-62 243.4 185 64.3
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 1.8e-62 243.0 185 62.7
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 2.3e-62 242.7 178 64.6
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 5.1e-62 241.5 179 63.7
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.5e-61 240.0 180 63.9
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 2.5e-61 239.2 185 62.2
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 2.8e-60 235.7 178 64.6
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 1.8e-59 233.0 171 64.3
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 1.3e-57 226.9 185 59.5
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 8.4e-57 224.2 181 63.0
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.3e-54 216.9 181 60.8
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 1.7e-49 199.9 180 56.7
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 5.5e-48 194.9 183 54.6
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 3.6e-47 192.2 170 58.8
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 1.8e-43 179.9 184 53.3
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.4e-42 175.6 117 69.2
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 2.5e-40 169.5 197 49.2
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 3.6e-39 165.6 117 65.0
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 1.8e-35 153.3 184 40.8
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 1.2e-34 150.6 158 50.6
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 5.0e-25 118.6 110 52.7
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.9e-24 116.7 100 57.0
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 2.3e-22 109.8 76 68.4
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 4.7e-15 85.5 166 33.1
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 3.4e-13 79.3 57 68.4
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 3.8e-09 65.9 55 52.7
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 3.8e-09 65.9 55 52.7
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 3.6e-07 59.3 38 71.1


User provided reference genes

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