Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 0.0e+00 1277.7 653 100.0
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 0.0e+00 1213.4 656 95.1
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 0.0e+00 1182.9 656 92.7
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 0.0e+00 1120.5 656 86.6
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 0.0e+00 1114.4 656 85.8
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 0.0e+00 1110.9 656 86.0
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 0.0e+00 1108.2 658 86.6
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 0.0e+00 1098.6 659 85.6
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 0.0e+00 1092.4 656 84.9
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 0.0e+00 1087.0 688 82.3
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 7.5e-302 1040.0 656 79.7
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 2.2e-301 1038.5 656 79.6
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 1.6e-296 1022.3 656 79.6
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 2.1e-296 1021.9 657 77.8
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 4.7e-296 1020.8 656 78.8
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 3.4e-294 1014.6 658 77.4
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 5.8e-294 1013.8 656 78.2
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 4.9e-293 1010.7 658 77.8
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.1e-292 1009.6 656 78.0
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 1.4e-292 1009.2 656 77.6
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 3.2e-292 1008.1 656 77.6
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.0e-290 1001.5 664 77.0
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 6.6e-290 1000.3 656 77.4
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 3.3e-289 998.0 653 78.3
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 3.3e-289 998.0 658 76.7
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 4.7e-288 994.2 655 76.8
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 1.4e-287 992.6 654 76.3
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 6.9e-287 990.3 656 76.4
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 2.2e-285 985.3 656 75.6
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 3.8e-285 984.6 653 77.3
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 4.9e-285 984.2 654 77.7
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 4.2e-284 981.1 653 75.2
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 9.3e-284 979.9 656 75.0
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 6.0e-283 977.2 658 75.8
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 3.9e-282 974.5 656 75.6
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 5.1e-282 974.2 659 76.2
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 5.1e-282 974.2 655 75.9
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.1e-281 973.0 658 76.6
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 2.5e-281 971.8 659 75.3
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 3.3e-281 971.5 656 74.2
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 4.3e-281 971.1 655 75.6
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 5.6e-281 970.7 659 76.5
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 7.3e-281 970.3 651 75.7
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 7.3e-281 970.3 658 76.3
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 9.6e-281 969.9 641 76.8
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 9.6e-281 969.9 658 75.1
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 3.6e-280 968.0 698 71.2
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 8.1e-280 966.8 659 75.1
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 1.1e-279 966.5 651 75.9
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 2.6e-278 961.8 665 75.6
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 9.9e-278 959.9 658 75.1
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 9.9e-278 959.9 652 74.5
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 3.8e-277 958.0 655 74.5
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 1.9e-276 955.7 652 74.4
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 4.2e-276 954.5 653 74.3
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 1.6e-275 952.6 661 74.4
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 6.0e-275 950.7 658 73.6
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 1.0e-274 949.9 653 73.7
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 2.3e-274 948.7 657 73.8
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 3.0e-274 948.3 679 71.3
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 3.9e-274 948.0 653 73.5
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 1.5e-273 946.0 661 74.3
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 2.5e-273 945.3 654 74.5
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 4.3e-273 944.5 661 74.0
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 9.6e-273 943.3 657 74.1
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 1.3e-272 943.0 699 71.2
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 8.1e-272 940.3 660 73.6
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 3.1e-271 938.3 664 73.5
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 3.1e-271 938.3 654 74.2
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 4.0e-271 937.9 659 74.1
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 7.6e-270 933.7 661 72.8
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 1.7e-269 932.6 658 71.0
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 5.5e-268 927.5 658 74.2
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 9.3e-268 926.8 652 73.6
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 1.6e-267 926.0 658 74.2
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 2.1e-267 925.6 656 73.2
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 6.0e-267 924.1 685 70.8
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 7.9e-267 923.7 659 71.0
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.0e-266 923.3 658 73.7
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 5.1e-266 921.0 652 72.9
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 5.1e-266 921.0 660 72.7
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 6.7e-266 920.6 653 73.2
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 4.3e-265 917.9 660 72.7
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 5.6e-265 917.5 652 71.3
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 9.6e-265 916.8 652 72.5
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 2.1e-264 915.6 654 72.8
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 3.7e-264 914.8 655 72.1
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 3.1e-263 911.8 659 71.5
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 2.4e-255 885.6 608 73.5
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 4.5e-246 854.7 742 60.8
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 5.9e-246 854.4 658 68.2
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 7.7e-246 854.0 653 69.1
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 5.3e-239 831.2 651 63.9
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 2.3e-234 815.8 535 77.9
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 3.7e-224 781.9 655 62.4
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 8.2e-224 780.8 498 79.9
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 1.8e-223 779.6 513 79.1
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 5.9e-222 774.6 656 63.4
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.8e-194 683.3 465 75.7
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 6.4e-192 674.9 463 74.3
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 1.9e-183 646.7 608 56.6
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.2e-183 646.0 462 73.6
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 3.9e-149 532.7 595 51.9
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 7.6e-145 518.5 374 70.9
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 2.8e-139 500.0 348 71.3
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 1.2e-137 494.6 348 71.0
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 1.9e-135 487.3 339 72.0
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 7.0e-122 442.2 343 66.5
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 4.5e-121 439.5 343 66.2
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 6.7e-117 425.6 330 62.4
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 1.3e-115 421.4 330 62.7
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.2e-113 414.8 327 64.2
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 7.2e-111 405.6 224 91.1
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 1.4e-109 401.4 461 51.0
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 4.1e-106 389.8 305 64.9
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 3.5e-105 386.7 240 84.2
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 1.0e-93 348.6 261 72.0
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 1.4e-74 285.0 142 97.9
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 9.2e-74 282.3 230 65.7
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 1.4e-66 258.5 156 85.9
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 8.6e-64 249.2 163 76.7
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 1.5e-63 248.4 168 72.6
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 1.5e-60 238.4 227 59.5
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 1.1e-55 222.2 137 81.0
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 4.8e-54 216.9 143 76.9
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.5e-52 211.8 140 76.4
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 1.3e-51 208.8 308 44.5
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 5.4e-50 203.4 129 76.7
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 1.6e-49 201.8 284 43.0
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 1.6e-46 191.8 107 90.7
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 1.0e-40 172.6 95 87.4
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 9.0e-37 159.5 124 66.9
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 2.2e-35 154.8 291 35.4
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 3.2e-34 151.0 115 65.2
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 3.5e-33 147.5 131 61.8
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 1.3e-30 139.0 81 80.2
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 2.6e-28 131.3 132 54.5
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 4.2e-26 124.0 86 74.4
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 2.5e-18 98.2 72 68.1
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 5.5e-18 97.1 58 74.1
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 6.1e-17 93.6 58 70.7
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 2.0e-15 88.6 125 39.2
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 4.3e-15 87.4 53 83.0
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 2.4e-13 81.6 52 76.9
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 2.6e-12 78.2 79 50.6
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 4.5e-12 77.4 52 73.1
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 7.7e-12 76.6 73 53.4
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 2.9e-11 74.7 44 77.3
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 1.8e-08 65.5 36 88.9
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 8.2e-06 56.6 29 93.1
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 8.2e-06 56.6 29 93.1


User provided reference genes

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