Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 6.8e-182 640.6 334 100.0
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 9.2e-171 603.6 334 94.3
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 8.9e-166 587.0 329 92.7
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 7.6e-165 583.9 339 90.9
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 9.6e-160 567.0 333 89.2
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 3.2e-155 552.0 325 88.3
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 2.9e-148 528.9 326 84.0
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 2.8e-143 512.3 332 80.1
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 4.9e-140 501.5 332 78.9
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 4.2e-139 498.4 332 78.3
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 4.1e-134 481.9 326 76.4
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 8.7e-129 464.2 335 73.7
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 4.3e-128 461.8 308 76.9
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 7.4e-128 461.1 332 74.1
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 2.2e-127 459.5 334 74.6
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 4.8e-127 458.4 315 74.3
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 1.1e-126 457.2 316 75.0
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.4e-126 456.8 304 77.0
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 5.3e-126 454.9 332 72.3
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 2.0e-125 453.0 321 73.5
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 2.6e-125 452.6 319 74.0
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 2.6e-125 452.6 339 71.4
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.6e-125 452.6 335 71.0
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 3.4e-125 452.2 333 73.0
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.4e-125 452.2 332 72.0
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 1.0e-124 450.7 326 73.6
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.9e-124 449.1 319 73.7
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 6.5e-124 448.0 336 71.4
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.1e-123 447.2 319 74.9
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.4e-123 446.8 331 71.0
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 1.9e-123 446.4 332 72.0
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.9e-123 446.4 339 71.4
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 1.9e-123 446.4 330 72.1
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 3.2e-123 445.7 316 74.7
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 3.2e-123 445.7 331 71.0
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 4.2e-123 445.3 319 74.3
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 5.5e-123 444.9 319 74.3
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 5.5e-123 444.9 319 74.3
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 9.4e-123 444.1 319 74.3
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 2.1e-122 443.0 319 72.4
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.7e-122 442.6 319 74.0
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 2.7e-122 442.6 301 78.1
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 4.6e-122 441.8 332 70.8
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 1.4e-121 440.3 329 71.4
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 2.0e-120 436.4 315 71.7
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 2.5e-120 436.0 322 70.2
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 3.3e-120 435.6 330 68.5
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 7.4e-120 434.5 322 69.9
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 9.7e-120 434.1 320 71.2
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 9.7e-120 434.1 322 70.2
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 1.3e-119 433.7 316 71.8
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 1.7e-119 433.3 309 72.5
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 2.2e-119 433.0 293 74.4
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 6.3e-119 431.4 319 69.3
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 6.3e-119 431.4 309 73.5
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 1.1e-118 430.6 322 70.2
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 1.8e-118 429.9 345 68.1
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 2.4e-118 429.5 332 69.0
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 3.4e-117 425.6 296 74.3
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 1.0e-116 424.1 332 69.0
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 6.5e-116 421.4 324 67.9
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 1.4e-115 420.2 314 69.7
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 3.2e-115 419.1 349 68.5
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 2.7e-114 416.0 313 71.6
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 3.6e-114 415.6 352 65.3
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 1.8e-113 413.3 321 67.6
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 1.8e-113 413.3 334 64.4
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 1.8e-113 413.3 315 69.8
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 5.1e-113 411.8 318 70.4
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 5.1e-113 411.8 316 70.6
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 1.1e-112 410.6 327 66.1
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 2.0e-112 409.8 342 66.1
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 2.6e-112 409.5 291 72.5
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 4.4e-112 408.7 289 71.3
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 4.4e-112 408.7 326 66.3
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 4.4e-112 408.7 378 61.4
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 7.4e-112 407.9 322 68.9
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 9.7e-112 407.5 321 67.6
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 2.2e-111 406.4 323 67.2
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 2.8e-111 406.0 297 68.7
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 3.7e-111 405.6 352 65.1
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 4.8e-111 405.2 327 66.1
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.8e-110 403.3 334 65.9
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 2.4e-110 402.9 287 71.4
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 1.2e-109 400.6 333 65.8
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 5.9e-109 398.3 391 58.6
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 1.7e-108 396.7 320 65.9
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 2.5e-107 392.9 323 65.3
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 3.2e-107 392.5 295 68.1
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 9.4e-107 391.0 322 64.6
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 1.2e-106 390.6 291 69.8
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.6e-106 390.2 319 65.5
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 3.6e-106 389.0 306 68.6
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 1.0e-105 387.5 323 64.1
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 1.4e-105 387.1 313 65.8
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 3.0e-105 386.0 322 64.3
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 4.0e-105 385.6 305 66.2
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 4.0e-105 385.6 316 64.6
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 6.7e-105 384.8 323 63.8
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 1.5e-104 383.6 307 65.8
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 2.0e-104 383.3 320 64.4
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.7e-104 381.7 264 73.9
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 7.5e-104 381.3 314 65.9
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 1.3e-103 380.6 308 65.3
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 1.3e-103 380.6 308 65.3
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 2.8e-103 379.4 322 63.4
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 8.2e-103 377.9 319 63.6
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 3.1e-102 375.9 308 64.3
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 3.1e-102 375.9 308 64.3
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 5.3e-102 375.2 343 62.4
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 9.1e-102 374.4 318 62.9
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 1.2e-101 374.0 318 62.6
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 1.2e-101 374.0 318 62.9
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 3.5e-101 372.5 317 62.1
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 4.5e-101 372.1 320 62.5
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 4.5e-101 372.1 402 52.2
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 7.7e-101 371.3 314 63.1
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 6.5e-100 368.2 318 61.9
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 5.5e-99 365.2 312 62.8
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 9.4e-99 364.4 329 59.3
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 1.0e-97 360.9 308 63.0
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 5.2e-97 358.6 354 59.0
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 8.8e-97 357.8 387 54.8
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.5e-96 357.1 317 60.3
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 9.8e-96 354.4 326 59.5
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.7e-95 353.6 326 61.7
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 7.2e-91 338.2 324 56.5
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 4.7e-90 335.5 298 61.1
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 1.1e-83 314.3 316 54.7
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 8.0e-82 308.1 287 58.2
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 1.8e-78 297.0 324 51.9
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 7.0e-78 295.0 313 53.7
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 2.3e-76 290.0 310 52.3
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 9.5e-75 284.6 312 53.8
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 4.7e-74 282.3 308 53.6
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 6.8e-73 278.5 248 59.7
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 9.2e-70 268.1 314 51.9
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 1.3e-68 264.2 340 48.2
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 3.9e-68 262.7 331 49.8
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 1.6e-66 257.3 269 55.0
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 2.1e-61 240.4 218 61.5
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 1.0e-60 238.0 167 71.9
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 2.3e-60 236.9 253 54.9
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.0e-60 236.5 184 67.9
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 2.9e-55 219.9 234 54.7
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.1e-52 209.1 135 78.5
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 5.1e-52 209.1 186 64.5
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 4.7e-50 202.6 151 65.6
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 4.2e-46 189.5 173 61.3
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 4.0e-41 172.9 312 39.1
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 8.4e-39 165.2 160 61.9
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 6.0e-37 159.1 160 60.0
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 2.5e-35 153.7 113 72.6
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 4.2e-30 136.3 135 58.5
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 1.9e-27 127.5 372 33.3
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 1.3e-26 124.8 298 33.6
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 4.6e-21 106.3 79 62.0
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 3.0e-20 103.6 86 59.3
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 3.3e-19 100.1 99 57.6
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 7.4e-19 99.0 79 60.8
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 2.8e-18 97.1 89 56.2
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 1.9e-14 84.3 61 70.5
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 2.5e-14 84.0 79 64.6
TAR626G1412 Trochodendron aralioides HOM05D004156 ORTHO05D005259 4.8e-10 69.7 104 46.2
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 4.8e-10 69.7 52 59.6
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 1.1e-09 68.6 52 57.7
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 2.4e-09 67.4 38 86.8
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 9.1e-09 65.5 43 69.8
Glyma.02G155902 Glycine max HOM05D004156 ORTHO05D214643 1.4e-06 58.2 38 76.3
Actinidia26746 Actinidia chinensis HOM05D004156 ORTHO05D054118 5.5e-06 56.2 88 40.9


User provided reference genes

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