Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 7.9e-142 507.3 292 100.0
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 2.8e-139 498.8 292 91.8
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 2.3e-133 479.2 292 84.2
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 1.2e-129 466.8 293 90.4
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 3.4e-129 465.3 292 89.4
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 3.8e-128 461.8 292 79.5
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 3.0e-125 452.2 292 78.8
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 1.1e-124 450.3 292 78.4
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 7.4e-124 447.6 292 88.4
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 4.1e-122 441.8 293 83.3
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 3.8e-120 435.3 292 75.0
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 2.3e-117 426.0 294 73.1
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 3.9e-117 425.2 292 71.9
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 1.5e-116 423.3 292 72.6
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 2.6e-116 422.5 292 71.9
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 3.3e-116 422.2 292 71.6
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 3.3e-116 422.2 290 79.0
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 5.7e-116 421.4 294 72.1
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 7.4e-116 421.0 292 72.6
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 9.7e-116 420.6 292 70.9
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 1.3e-115 420.2 285 74.7
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.3e-115 420.2 292 72.3
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.3e-115 420.2 292 71.2
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 1.7e-115 419.9 292 71.9
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.7e-115 419.9 292 71.2
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 3.7e-115 418.7 290 70.7
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 3.7e-115 418.7 292 70.9
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 6.3e-115 417.9 292 74.3
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 6.3e-115 417.9 293 71.3
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 8.2e-115 417.5 292 71.6
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 8.2e-115 417.5 292 70.9
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 8.2e-115 417.5 292 70.2
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.1e-114 417.2 290 70.0
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 1.1e-114 417.2 290 70.0
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 1.8e-114 416.4 292 70.9
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 3.1e-114 415.6 292 71.2
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.1e-114 415.6 294 71.8
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 6.9e-114 414.5 293 71.0
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 1.2e-113 413.7 292 70.2
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.2e-113 413.7 292 70.2
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 1.2e-113 413.7 292 70.5
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 1.5e-113 413.3 292 69.5
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.0e-113 412.9 292 70.9
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.6e-113 412.5 292 70.2
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 2.6e-113 412.5 293 74.1
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 5.9e-113 411.4 292 70.5
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 5.9e-113 411.4 292 69.9
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 7.7e-113 411.0 290 71.0
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 7.7e-113 411.0 294 71.1
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 2.2e-112 409.5 291 73.2
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.9e-112 409.1 290 72.4
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 2.9e-112 409.1 306 67.6
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 3.8e-112 408.7 292 69.5
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 3.8e-112 408.7 292 71.6
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 5.0e-112 408.3 292 70.2
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 6.5e-112 407.9 292 70.2
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 4.2e-111 405.2 291 72.9
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 5.5e-111 404.8 292 68.5
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 1.6e-110 403.3 291 70.4
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 2.7e-110 402.5 291 70.4
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 6.1e-110 401.4 323 65.0
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 6.1e-110 401.4 293 73.0
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.4e-109 400.2 292 67.1
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.8e-109 399.8 292 68.5
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 1.8e-109 399.8 292 68.8
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 2.3e-109 399.4 291 70.4
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 3.0e-109 399.1 292 69.5
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 3.0e-109 399.1 290 68.6
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 3.9e-109 398.7 292 72.9
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 3.9e-109 398.7 292 72.9
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 8.8e-109 397.5 290 69.3
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 8.8e-109 397.5 326 62.6
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 1.1e-108 397.1 297 71.4
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.5e-108 396.7 290 67.6
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 2.6e-108 396.0 280 69.6
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 3.3e-108 395.6 292 77.7
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 4.4e-108 395.2 293 70.3
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 4.4e-108 395.2 290 70.7
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 7.4e-108 394.4 292 67.8
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 1.3e-107 393.7 292 77.4
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 4.8e-107 391.7 294 66.7
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 6.3e-107 391.3 292 69.5
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 8.2e-107 391.0 290 74.8
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.1e-106 390.6 290 69.3
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 1.4e-106 390.2 273 70.7
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 1.4e-106 390.2 292 66.4
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.8e-106 389.8 290 69.3
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 2.4e-106 389.4 297 71.0
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 4.1e-106 388.7 321 63.2
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 5.3e-106 388.3 292 67.5
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 5.3e-106 388.3 290 75.9
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.6e-105 386.7 292 66.8
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 2.2e-104 382.9 226 81.4
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 2.9e-104 382.5 292 63.7
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 8.5e-104 380.9 310 65.8
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 8.5e-104 380.9 308 65.9
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 1.5e-103 380.2 292 69.2
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 2.5e-103 379.4 291 75.3
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 4.2e-103 378.6 322 61.8
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 1.6e-102 376.7 268 69.4
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 1.4e-101 373.6 290 73.1
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 1.8e-101 373.2 293 64.2
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 3.0e-101 372.5 292 64.7
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 3.0e-101 372.5 292 64.7
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 1.1e-100 370.5 292 64.0
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 2.6e-100 369.4 297 64.0
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 7.5e-100 367.9 227 78.9
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 6.3e-99 364.8 292 65.4
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 1.2e-97 360.5 292 62.0
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 5.9e-97 358.2 293 64.8
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 6.5e-96 354.8 293 65.2
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.5e-95 353.6 293 63.8
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 1.2e-94 350.5 238 73.1
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 1.2e-94 350.5 298 61.4
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 1.2e-92 344.0 297 62.6
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 4.8e-91 338.6 260 76.5
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 1.1e-90 337.4 204 78.4
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 1.8e-90 336.7 226 69.9
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 7.0e-90 334.7 191 83.2
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 1.2e-89 334.0 385 50.4
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 6.1e-86 321.6 285 68.1
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.1e-82 308.9 290 56.6
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 6.6e-80 301.6 297 55.2
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 2.2e-75 286.6 288 52.1
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 4.9e-75 285.4 191 69.1
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 2.4e-74 283.1 295 50.2
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 4.1e-74 282.3 292 53.4
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 9.2e-74 281.2 292 51.4
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 1.3e-72 277.3 208 66.3
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 1.1e-71 274.2 172 74.4
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 1.0e-69 267.7 202 65.8
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 5.8e-68 261.9 295 47.8
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 2.7e-65 253.1 294 48.3
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 6.0e-57 225.3 290 47.9
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 1.3e-51 207.6 296 45.3
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 1.3e-51 207.6 296 45.3
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 1.3e-51 207.6 296 45.3
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 8.4e-51 204.9 263 47.9
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 8.9e-45 184.9 105 83.8
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 2.0e-44 183.7 108 83.3
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 4.2e-42 176.0 153 62.1
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.2e-41 174.5 153 61.4
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.2e-41 174.5 153 61.4
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 6.0e-41 172.2 228 43.9
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 5.4e-34 149.1 188 43.6
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 1.8e-32 144.1 85 82.4
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 9.0e-29 131.7 151 47.0
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 4.9e-27 125.9 73 80.8
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 4.9e-27 125.9 73 80.8
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 1.9e-26 124.0 72 80.6
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 2.4e-26 123.6 60 95.0
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 1.8e-24 117.5 79 72.2
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 6.7e-24 115.5 79 67.1
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 1.1e-21 108.2 130 48.5
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 2.4e-21 107.1 128 46.9
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 2.7e-17 93.6 59 74.6
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.0e-16 91.7 107 42.1
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 4.8e-14 82.8 86 54.7
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 1.8e-13 80.9 188 35.6
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 3.1e-13 80.1 280 28.2
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.1e-10 71.6 58 60.3
Glyma.10G062551 Glycine max HOM05D004410 ORTHO05D211239 4.8e-06 56.2 35 80.0


User provided reference genes

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