Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 2095.9 1050 100.0
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 2004.2 1050 95.4
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1921.0 1050 91.6
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1881.3 1034 91.3
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1788.1 1057 84.4
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1778.1 1049 84.7
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1772.7 1051 84.4
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1748.0 1050 83.2
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1702.6 1057 80.5
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1702.6 1057 80.3
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1695.2 1052 81.9
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1620.9 1055 76.5
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1619.8 1055 76.3
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1614.0 1055 76.5
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1612.8 1055 75.5
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1608.2 1057 76.3
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1596.3 1057 75.6
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1582.0 1056 74.5
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1581.6 1054 74.9
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1580.8 1055 74.2
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1575.8 1054 74.5
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1574.3 1055 74.8
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1571.6 1055 75.4
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1570.1 1051 73.8
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1570.1 1057 74.7
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1568.9 1051 73.2
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1568.9 1055 75.2
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1566.2 1056 73.9
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1562.7 1055 74.7
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1552.0 1055 73.6
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1551.2 1057 73.1
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1537.7 1055 73.6
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1529.6 1141 69.9
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1527.3 1146 67.8
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1525.4 1056 71.7
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1522.7 1053 72.4
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1522.3 1053 71.7
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1516.9 1120 68.7
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1515.4 1056 71.2
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1515.4 1058 71.5
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1515.0 1053 71.9
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1511.5 1058 71.8
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1508.4 1072 71.2
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1508.4 1072 71.2
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1504.2 1055 70.9
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1498.0 1055 71.1
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1498.0 1058 70.4
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1489.2 1054 70.6
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1488.4 1055 69.7
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1484.5 1056 70.2
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1483.0 1056 70.0
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1477.2 1061 70.1
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1476.8 1056 70.0
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1472.6 1054 69.9
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1471.4 1042 70.2
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1468.4 1040 70.7
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1466.8 1053 69.2
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1464.5 1057 69.3
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1463.7 1052 70.5
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1463.4 1132 66.6
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1463.0 1056 70.0
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1462.6 1055 70.1
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1462.6 1055 70.1
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1461.8 1052 68.1
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1461.4 1054 69.2
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1459.9 960 76.4
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1456.8 1055 69.9
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1453.7 1054 69.0
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1450.6 1053 69.2
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1449.9 1056 69.4
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1447.6 1056 68.8
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1444.9 976 73.9
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1439.5 1056 67.3
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1438.7 1052 68.6
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1435.6 1053 67.9
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1424.8 1059 67.9
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1424.1 1096 66.2
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1421.0 1264 59.2
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1416.7 1060 67.5
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1411.7 1067 67.0
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1407.1 847 82.2
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1406.7 1053 67.8
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1406.0 1054 67.0
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1402.5 1060 66.0
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1398.3 1063 67.7
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1392.9 1063 66.4
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1380.2 945 72.6
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1284.6 854 75.2
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1277.7 843 75.4
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1269.6 1052 61.3
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1231.1 800 77.4
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1127.9 790 70.4
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 0.0e+00 1094.0 1083 54.1
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1079.3 789 69.1
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 1.2e-309 1066.6 1055 52.5
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 1.0e-308 1063.5 959 59.5
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 3.9e-292 1008.4 1067 50.5
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 9.4e-278 960.7 778 63.5
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 1.4e-262 910.2 633 72.2
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 4.1e-257 892.1 951 53.7
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 4.2e-238 828.9 517 77.8
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 3.0e-236 822.8 658 62.6
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 6.3e-234 815.1 518 77.6
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 1.1e-209 734.6 452 78.1
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.4e-209 734.2 696 55.9
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 9.2e-209 731.5 452 77.7
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 1.2e-208 731.1 481 74.4
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 2.3e-207 726.9 455 77.4
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 2.5e-206 723.4 449 76.4
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 1.2e-203 714.5 496 71.2
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 7.6e-203 711.8 441 76.4
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 1.7e-202 710.7 460 74.3
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 1.5e-198 697.6 450 75.3
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 8.7e-191 671.8 457 70.9
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 3.3e-190 669.8 474 70.0
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 3.2e-185 653.3 448 71.9
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 3.4e-171 606.7 458 66.6
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 1.1e-169 601.7 449 67.0
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 4.2e-169 599.7 428 69.6
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 2.2e-162 577.4 452 64.4
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 2.5e-153 547.4 366 71.6
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 9.4e-153 545.4 400 68.2
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 2.7e-152 543.9 366 71.9
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 6.1e-152 542.7 613 49.9
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.8e-151 541.2 407 67.6
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 1.4e-140 505.0 1118 31.5
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 5.2e-119 433.3 267 79.4
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 5.0e-114 416.8 260 79.2
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 4.7e-112 410.2 286 73.4
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 5.2e-111 406.8 271 75.3
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 2.6e-102 377.9 213 87.3
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.3e-101 375.6 238 78.6
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 1.7e-101 375.2 237 80.6
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 4.9e-101 373.6 318 61.0
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 1.9e-97 361.7 266 71.1
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 1.4e-71 275.8 156 84.0
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 2.7e-67 261.5 286 49.3
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 1.0e-61 243.0 210 59.5
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 7.4e-57 226.9 206 58.7
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 5.3e-47 194.1 180 60.0
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 3.2e-44 184.9 121 71.1
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.6e-43 182.6 156 58.3
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 1.5e-38 166.0 155 58.1
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 4.7e-35 154.5 137 56.9
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 7.9e-35 153.7 177 50.8
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 2.3e-34 152.1 110 67.3
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 3.0e-34 151.8 137 57.7
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 1.8e-31 142.5 106 67.9
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 7.0e-31 140.6 83 74.7
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 1.1e-28 133.3 97 67.0
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 2.5e-28 132.1 83 72.3
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 2.2e-24 119.0 96 62.5
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 5.9e-22 110.9 96 59.4
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 2.2e-21 109.0 55 90.9
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 3.0e-18 98.6 95 52.6
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 3.0e-18 98.6 104 51.9
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 1.3e-16 93.2 58 70.7
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 6.3e-16 90.9 62 77.4
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 7.0e-15 87.4 108 42.6
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 7.0e-15 87.4 53 79.2
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 5.9e-14 84.3 74 59.5
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 3.8e-13 81.6 56 66.1
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 5.0e-13 81.3 69 59.4
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 6.5e-13 80.9 76 57.9
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 4.7e-11 74.7 41 82.9
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 2.3e-10 72.4 74 52.7
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 2.3e-10 72.4 44 79.5
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 1.4e-07 63.2 36 75.0
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 4.1e-07 61.6 48 64.6


User provided reference genes

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