Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G056900 Phaseolus vulgaris HOM05D006143 ORTHO05D007587 1.2e-264 916.0 470 100.0
Glyma.13G172400 Glycine max HOM05D006143 ORTHO05D007587 2.8e-197 692.2 477 77.1
Glyma.07G203300 Glycine max HOM05D006143 ORTHO05D007587 3.6e-197 691.8 477 77.1
Lj4g0027541 Lotus japonicus HOM05D006143 ORTHO05D007587 1.2e-176 623.6 477 69.4
TPR.G16154 Trifolium pratense HOM05D006143 ORTHO05D007587 2.3e-175 619.4 478 68.2
Psat7g118360 Pisum sativum HOM05D006143 ORTHO05D007587 2.8e-165 585.9 478 65.9
Ca_26041_v3 Cicer arietinum L. HOM05D006143 ORTHO05D007587 5.3e-164 581.6 437 70.5
Medtr4g087975 Medicago truncatula HOM05D006143 ORTHO05D007587 3.8e-162 575.5 470 65.5
Lalb_Chr16g0384181 Lupinus albus HOM05D006143 ORTHO05D007587 5.5e-161 571.6 481 63.4
arahy.Tifrunner.gnm1.ann1.W3DLTW Arachis hypogaea HOM05D006143 ORTHO05D007587 2.7e-160 569.3 464 65.1
arahy.Tifrunner.gnm1.ann1.VAEI8B Arachis hypogaea HOM05D006143 ORTHO05D007587 7.9e-160 567.8 466 65.0
VMungo0251G1209 Vigna mungo HOM05D006143 ORTHO05D007587 2.9e-154 549.3 326 88.3
Medtr6g039570 Medicago truncatula HOM05D006143 ORTHO05D007587 2.9e-146 522.7 468 61.1
Prupe.4G055900 Prunus persica HOM05D006143 ORTHO05D007587 1.3e-122 444.1 466 51.1
Potri.011G062100 Populus trichocarpa HOM05D006143 ORTHO05D007587 1.1e-121 441.0 466 52.1
CiPaw.10G054900 Carya illinoinensis HOM05D006143 ORTHO05D007587 2.5e-121 439.9 469 51.0
GSVIVG01021150001 Vitis vinifera HOM05D006143 ORTHO05D007587 4.2e-121 439.1 465 50.5
Dinv17374 Davidia involucrata HOM05D006143 ORTHO05D007587 1.6e-120 437.2 472 50.8
Manes.16G034450 Manihot esculenta HOM05D006143 ORTHO05D007587 7.5e-118 428.3 479 49.7
Sabra11G0044000 Salix brachista HOM05D006143 ORTHO05D007587 2.8e-117 426.4 466 50.0
MD05G1306600 Malus domestica HOM05D006143 ORTHO05D007587 4.8e-117 425.6 465 49.0
Duzib235G0124 Durio zibethinus HOM05D006143 ORTHO05D007587 9.1e-116 421.4 468 48.9
CSS0012799 Camellia sinensis var. sinensis HOM05D006143 ORTHO05D007587 1.0e-114 417.9 475 48.0
RcHm_v2.0_Chr5g0009801 Rosa chinensis HOM05D006143 ORTHO05D007587 5.0e-114 415.6 478 48.7
Hma1.2p1_0155F.1_g068560 Hydrangea macrophylla HOM05D006143 ORTHO05D007587 1.2e-112 411.0 473 49.9
Atru.chr10.1746 Acer truncatum HOM05D006143 ORTHO05D007587 1.2e-110 404.4 472 48.7
FAN06G1438 Fragaria x ananassa HOM05D006143 ORTHO05D007587 8.3e-109 398.3 484 47.7
Thecc.06G177300 Theobroma cacao HOM05D006143 ORTHO05D007587 1.8e-108 397.1 468 47.4
FvH4_7g02070 Fragaria vesca HOM05D006143 ORTHO05D007587 2.4e-108 396.7 476 47.9
Eucgr.E03166 Eucalyptus grandis HOM05D006143 ORTHO05D007587 1.0e-106 391.3 474 46.8
MELO3C002630.2 Cucumis melo HOM05D006143 ORTHO05D007587 8.6e-106 388.3 464 45.9
FAN03G1069 Fragaria x ananassa HOM05D006143 ORTHO05D007587 8.6e-106 388.3 486 47.3
ClCG03G007960 Citrullus lanatus HOM05D006143 ORTHO05D007587 9.5e-105 384.8 464 46.1
FAN11G1643 Fragaria x ananassa HOM05D006143 ORTHO05D007587 4.7e-104 382.5 460 48.0
Ciclev10015477m.g Citrus clementina HOM05D006143 ORTHO05D007587 8.9e-103 378.3 412 51.0
Sc05g0007290 Simmondsia chinensis HOM05D006143 ORTHO05D007587 4.4e-102 375.9 469 45.8
Hund23878 Selenicereus undatus HOM05D006143 ORTHO05D007587 6.4e-101 372.1 473 45.5
Haze_06321 Corylus avellana HOM05D006143 ORTHO05D007587 1.1e-100 371.3 481 44.7
Cpa.g.sc7.33 Carica papaya HOM05D006143 ORTHO05D007587 2.4e-100 370.2 465 46.2
Gorai.011G031600 Gossypium raimondii HOM05D006143 ORTHO05D007587 3.2e-100 369.8 464 43.8
TWI63G1355 Tripterygium wilfordii HOM05D006143 ORTHO05D007587 1.6e-99 367.5 465 43.9
Nn1g04309 Nelumbo nucifera HOM05D006143 ORTHO05D007587 2.0e-99 367.1 451 45.0
Aqoxy4G00545 Aquilegia oxysepala HOM05D006143 ORTHO05D007587 3.5e-99 366.3 470 43.6
PGSC0003DMG400010721 Solanum tuberosum HOM05D006143 ORTHO05D007587 3.5e-99 366.3 472 44.5
Lsat_1_v5_gn_4_50941 Lactuca sativa HOM05D006143 ORTHO05D007587 6.0e-99 365.5 489 44.0
Gohir.D10G029700 Gossypium hirsutum HOM05D006143 ORTHO05D007587 1.0e-98 364.8 464 43.3
PGR042G3042 Punica granatum HOM05D006143 ORTHO05D007587 1.0e-98 364.8 449 44.5
FAN21G2423 Fragaria x ananassa HOM05D006143 ORTHO05D007587 3.9e-98 362.8 460 46.5
AUR62014918 Chenopodium quinoa HOM05D006143 ORTHO05D007587 1.9e-97 360.5 468 42.7
Peaxi162Scf00875g00320 Petunia axillaris HOM05D006143 ORTHO05D007587 2.1e-96 357.1 493 42.6
Sopen02g022240 Solanum pennellii HOM05D006143 ORTHO05D007587 4.7e-96 355.9 471 43.7
Migut.M01078 Erythranthe guttata HOM05D006143 ORTHO05D007587 8.0e-96 355.1 476 44.7
EL10Ac8g20474 Beta vulgaris HOM05D006143 ORTHO05D007587 1.8e-95 354.0 478 42.7
Cc02_g14290 Coffea canephora HOM05D006143 ORTHO05D007587 1.8e-95 354.0 470 44.3
COL.COLO4_31385 Corchorus olitorius HOM05D006143 ORTHO05D007587 5.2e-95 352.4 445 44.5
DCAR_007976 Daucus carota HOM05D006143 ORTHO05D007587 6.8e-95 352.1 479 43.4
FAN16G0487 Fragaria x ananassa HOM05D006143 ORTHO05D007587 6.8e-95 352.1 444 46.2
PSO832G2207 Papaver somniferum HOM05D006143 ORTHO05D007587 8.9e-95 351.7 466 44.4
ECA234G2393 Erigeron canadensis HOM05D006143 ORTHO05D007587 1.2e-94 351.3 468 43.4
Ah.01g004290 Amaranthus hybridus HOM05D006143 ORTHO05D007587 1.5e-94 350.9 464 43.3
Solyc02g077320.4 Solanum lycopersicum HOM05D006143 ORTHO05D007587 2.9e-93 346.7 465 43.9
MBI07_g06435_MAGBIO Magnolia biondii HOM05D006143 ORTHO05D007587 6.4e-93 345.5 451 45.2
Oeu045072.2 Olea europaea HOM05D006143 ORTHO05D007587 3.2e-92 343.2 460 43.3
HanXRQChr11g0327231 Helianthus annuus HOM05D006143 ORTHO05D007587 9.2e-92 341.7 463 41.7
PSO210G3197 Papaver somniferum HOM05D006143 ORTHO05D007587 1.1e-89 334.7 462 43.9
Sed0020086 Sechium edule HOM05D006143 ORTHO05D007587 1.6e-88 330.9 409 44.7
TAR626G0253 Trochodendron aralioides HOM05D006143 ORTHO05D007587 2.1e-88 330.5 338 52.4
THA.LOC104798414 Tarenaya hassleriana HOM05D006143 ORTHO05D007587 1.8e-87 327.4 461 41.9
AUR62031125 Chenopodium quinoa HOM05D006143 ORTHO05D007587 3.4e-86 323.2 403 43.7
Gohir.A10G029200 Gossypium hirsutum HOM05D006143 ORTHO05D007587 2.1e-83 313.9 436 41.7
Thhalv10025244m.g Eutrema salsugineum HOM05D006143 ORTHO05D007587 1.7e-82 310.8 463 41.3
Sabra11G0042500 Salix brachista HOM05D006143 ORTHO05D007587 3.0e-82 310.1 466 41.6
ATR0602G028 Amborella trichopoda HOM05D006143 ORTHO05D007587 1.1e-81 308.1 472 40.9
Aa31LG6G1190 Aethionema arabicum HOM05D006143 ORTHO05D007587 1.9e-81 307.4 465 40.2
AL7G35830 Arabidopsis lyrata HOM05D006143 ORTHO05D007587 9.6e-81 305.1 463 40.8
Actinidia39490 Actinidia chinensis HOM05D006143 ORTHO05D007587 2.1e-80 303.9 471 40.6
SGA_v2.0_scaffold16G07658 Striga asiatica HOM05D006143 ORTHO05D007587 1.4e-79 301.2 451 39.7
Nitab4.5_0011727g0010 Nicotiana tabacum HOM05D006143 ORTHO05D007587 1.8e-79 300.8 445 40.7
CARHR225290 Cardamine hirsuta HOM05D006143 ORTHO05D007587 6.8e-79 298.9 463 40.4
AT4G18470 Arabidopsis thaliana HOM05D006143 ORTHO05D007587 1.5e-78 297.7 464 40.5
Carub.0007s2278 Capsella rubella HOM05D006143 ORTHO05D007587 2.0e-78 297.4 464 40.7
BcaNung05875 Brassica carinata HOM05D006143 ORTHO05D007587 2.6e-78 297.0 464 40.1
BolC1t01214H Brassica oleracea HOM05D006143 ORTHO05D007587 2.2e-77 293.9 464 39.9
Sp7g15570 Schrenkiella parvula HOM05D006143 ORTHO05D007587 2.2e-77 293.9 464 39.7
C01p12400 Brassica napus HOM05D006143 ORTHO05D007587 4.9e-77 292.7 464 39.9
CsaV3_1G012630 Cucumis sativus L. HOM05D006143 ORTHO05D007587 6.4e-77 292.4 345 45.8
BcaC09g51506 Brassica carinata HOM05D006143 ORTHO05D007587 8.4e-77 292.0 464 39.9
BraA01t00988Z Brassica rapa HOM05D006143 ORTHO05D007587 1.1e-76 291.6 464 39.7
Cfa000554 Carpinus fangiana HOM05D006143 ORTHO05D007587 5.4e-76 289.3 304 52.6
Zm00001eb206790 Zea mays HOM05D006143 ORTHO05D007587 1.6e-75 287.7 462 39.2
Os02g0312800 Oryza sativa ssp. japonica HOM05D006143 ORTHO05D007587 1.1e-73 281.6 459 38.1
Nitab4.5_0000376g0080 Nicotiana tabacum HOM05D006143 ORTHO05D007587 4.3e-73 279.6 438 39.3
FvH4_3g08270 Fragaria vesca HOM05D006143 ORTHO05D007587 9.6e-73 278.5 337 48.1
A01p10420 Brassica napus HOM05D006143 ORTHO05D007587 1.6e-72 277.7 489 37.6
Eucgr.E02653 Eucalyptus grandis HOM05D006143 ORTHO05D007587 9.3e-68 261.9 305 47.9
CDE02G0230 Ceratophyllum demersum HOM05D006143 ORTHO05D007587 2.3e-66 257.3 464 36.4
VMungo0251G1903 Vigna mungo HOM05D006143 ORTHO05D007587 4.6e-59 233.0 141 83.7
TPR.G16261 Trifolium pratense HOM05D006143 ORTHO05D007587 1.4e-55 221.5 317 46.7
HPP92_003901 Vanilla planifolia HOM05D006143 ORTHO05D007587 1.5e-54 218.0 328 40.5
unitig_699.g19338 Utricularia gibba HOM05D006143 ORTHO05D007587 1.2e-51 208.4 460 32.6
arahy.Tifrunner.gnm1.ann1.74Q5DQ Arachis hypogaea HOM05D006143 ORTHO05D007587 1.3e-50 204.9 160 63.8
arahy.Tifrunner.gnm1.ann1.VQL787 Arachis hypogaea HOM05D006143 ORTHO05D007587 2.5e-41 174.1 118 72.0
arahy.Tifrunner.gnm1.ann1.RYY8E4 Arachis hypogaea HOM05D006143 ORTHO05D007587 2.2e-40 171.0 118 71.2
arahy.Tifrunner.gnm1.ann1.Y1II92 Arachis hypogaea HOM05D006143 ORTHO05D007587 2.2e-40 171.0 118 71.2
RcHm_v2.0_Chr3g0476981 Rosa chinensis HOM05D006143 ORTHO05D007587 6.5e-37 159.5 369 33.1
Rhsim02G0153000 Rhododendron simsii HOM05D006143 ORTHO05D007587 2.5e-36 157.5 183 45.9
arahy.Tifrunner.gnm1.ann1.6ZT1I9 Arachis hypogaea HOM05D006143 ORTHO05D007587 1.3e-32 145.2 118 64.4
MD10G1285900 Malus domestica HOM05D006143 ORTHO05D007587 5.5e-28 129.8 221 38.9
arahy.Tifrunner.gnm1.ann1.Y2C9I0 Arachis hypogaea HOM05D006143 ORTHO05D007587 1.4e-26 125.2 119 58.0
Mapoly0071s0015 Marchantia polymorpha HOM05D006143 ORTHO05D007587 1.2e-22 112.1 498 24.9
HPP92_003867 Vanilla planifolia HOM05D006143 ORTHO05D007587 1.5e-22 111.7 252 33.3
Pp3c13_1090 Physcomitrium patens HOM05D006143 ORTHO05D007587 8.8e-18 95.9 424 24.3
AagrBONN_evm.TU.Sc2ySwM_344.2178 Anthoceros agrestis HOM05D006143 ORTHO05D007587 5.7e-17 93.2 454 24.2
Nn4g22609 Nelumbo nucifera HOM05D006143 ORTHO05D007587 4.8e-16 90.1 88 53.4
MD10G1285700 Malus domestica HOM05D006143 ORTHO05D007587 1.1e-15 89.0 77 58.4
SEGI_30740 Sequoiadendron giganteum HOM05D006143 ORTHO05D007587 5.9e-14 83.2 158 32.9
SEGI_37534 Sequoiadendron giganteum HOM05D006143 ORTHO05D007587 5.9e-14 83.2 158 32.9
SHI28510 Sapria himalayana HOM05D006143 ORTHO05D007587 1.1e-12 79.0 88 46.6
TPR.G16274 Trifolium pratense HOM05D006143 ORTHO05D007587 1.0e-10 72.4 56 60.7
arahy.Tifrunner.gnm1.ann1.SUI2IU Arachis hypogaea HOM05D006143 ORTHO05D007587 3.0e-10 70.9 53 64.2
HPP92_003900 Vanilla planifolia HOM05D006143 ORTHO05D007587 3.0e-10 70.9 124 34.7
MD10G1285800 Malus domestica HOM05D006143 ORTHO05D007587 1.1e-07 62.4 67 46.3
SMO117G0244 Selaginella moellendorffii HOM05D006143 ORTHO05D007587 1.1e-07 62.4 79 44.3
SEGI_26564 Sequoiadendron giganteum HOM05D001915 ORTHO05D000007 4.1e-07 60.5 113 31.0


User provided reference genes

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