Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 0.0e+00 1317.4 904 100.0
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 1.1e-290 1003.4 980 78.5
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 1.1e-287 993.4 974 78.5
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 1.1e-261 907.1 957 75.5
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 6.9e-237 824.7 1057 64.7
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 5.5e-218 761.9 976 68.6
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 1.2e-209 734.2 978 66.9
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 6.1e-209 731.9 1049 61.7
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 1.1e-202 711.1 983 67.8
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 2.7e-188 663.3 980 54.3
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 2.2e-187 660.2 705 63.8
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 6.5e-187 658.7 651 69.6
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 1.9e-186 657.1 1053 59.0
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 4.0e-184 649.4 680 67.2
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 1.8e-181 640.6 646 66.9
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 7.0e-181 638.6 702 65.1
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 1.2e-180 637.9 738 60.8
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 5.9e-180 635.6 712 61.1
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 1.0e-179 634.8 972 64.6
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 2.3e-179 633.6 675 66.1
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 2.8e-177 626.7 942 62.8
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 4.4e-175 619.4 727 63.3
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 9.8e-175 618.2 600 68.8
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 2.9e-174 616.7 685 61.5
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 3.7e-174 616.3 615 68.9
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 4.9e-174 615.9 669 66.4
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 8.3e-174 615.1 622 62.5
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 1.8e-173 614.0 572 71.0
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.6e-172 610.9 705 62.3
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 2.3e-171 607.1 706 61.0
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.5e-170 603.6 623 66.1
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.3e-170 603.2 662 64.0
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 5.6e-170 602.4 623 66.0
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 2.1e-169 600.5 719 61.3
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 6.8e-168 595.5 643 64.5
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 1.4e-165 587.8 611 67.8
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.9e-165 587.4 687 60.6
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.7e-163 580.9 704 61.2
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 6.6e-163 578.9 671 62.1
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 6.6e-163 578.9 676 61.5
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 8.6e-163 578.6 604 64.6
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 3.3e-162 576.6 724 57.7
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 7.3e-162 575.5 705 60.9
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 2.8e-161 573.5 705 60.6
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 3.6e-161 573.2 705 60.6
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 5.2e-160 569.3 690 61.6
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 2.0e-159 567.4 699 58.1
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 4.4e-159 566.2 675 61.0
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 4.9e-158 562.8 749 58.6
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 1.1e-157 561.6 605 59.2
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 1.6e-156 557.8 719 55.8
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 3.5e-156 556.6 665 59.7
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 1.9e-154 550.8 616 65.9
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 4.3e-154 549.7 688 60.2
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 1.2e-153 548.1 679 57.7
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.6e-153 547.7 701 59.6
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 2.1e-153 547.4 666 58.7
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 2.8e-153 547.0 684 60.8
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.6e-153 546.6 689 60.5
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 8.1e-153 545.4 778 52.3
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 3.1e-152 543.5 707 57.3
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 4.4e-151 539.7 704 59.5
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 2.2e-150 537.3 701 58.6
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 2.9e-150 537.0 576 60.8
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 3.8e-150 536.6 650 57.5
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 9.2e-149 531.9 610 58.9
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 3.3e-146 523.5 703 56.6
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.1e-144 518.5 729 54.6
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 1.4e-144 518.1 647 58.1
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 1.8e-144 517.7 710 55.5
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 6.9e-144 515.8 665 58.0
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 7.6e-143 512.3 690 56.2
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 2.2e-142 510.8 622 60.0
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 3.2e-141 506.9 693 58.0
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 4.2e-141 506.5 693 57.9
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 5.4e-141 506.1 650 56.9
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 7.1e-141 505.8 497 60.8
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 9.3e-141 505.4 683 51.4
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 2.7e-140 503.8 597 58.1
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 2.7e-140 503.8 662 58.5
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 4.6e-140 503.1 644 57.6
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 7.8e-140 502.3 497 60.4
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 8.7e-139 498.8 595 59.7
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 4.8e-137 493.0 721 52.1
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 1.4e-136 491.5 588 54.8
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 2.4e-136 490.7 724 51.5
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 2.6e-135 487.3 637 57.6
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 2.6e-135 487.3 620 55.6
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 1.7e-134 484.6 631 53.7
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 1.7e-134 484.6 631 53.7
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 4.9e-134 483.0 631 53.6
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 4.2e-133 479.9 698 52.6
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 4.2e-133 479.9 613 57.4
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 3.5e-132 476.9 613 57.4
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.3e-131 474.9 664 54.7
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 3.9e-131 473.4 679 54.9
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 2.1e-129 467.6 719 54.2
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 1.4e-128 464.9 685 52.8
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 9.0e-128 462.2 619 59.9
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 2.2e-126 457.6 488 60.5
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 6.9e-112 409.5 342 68.1
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.7e-110 404.8 289 72.3
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 2.8e-105 387.5 473 63.8
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 2.5e-101 374.4 518 62.7
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 4.1e-96 357.1 491 48.7
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 7.7e-95 352.8 486 50.4
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 3.3e-90 337.4 210 78.1
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 1.0e-86 325.9 605 46.8
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 9.1e-72 276.2 474 45.4
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 8.6e-70 269.6 542 39.3
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 1.2e-66 259.2 177 72.9
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 5.4e-64 250.4 237 57.0
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 4.3e-61 240.7 176 71.0
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 9.8e-58 229.6 446 42.4
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 3.3e-53 214.5 625 40.0
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 7.8e-47 193.4 435 39.5
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.9e-45 188.7 307 60.6
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 2.3e-43 181.8 271 52.8
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 3.1e-43 181.4 286 49.0
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 8.6e-38 163.3 313 55.3
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 7.3e-37 160.2 466 41.0
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 2.8e-36 158.3 206 54.4
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 3.4e-26 124.8 148 56.8
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 4.9e-25 120.9 71 83.1
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 2.1e-20 105.5 89 59.6
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 8.1e-20 103.6 63 74.6
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 9.9e-18 96.7 207 34.3
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 1.4e-16 92.8 105 52.4
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 2.4e-16 92.0 80 66.2
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 3.2e-16 91.7 98 55.1
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 2.1e-15 89.0 101 47.5
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 6.7e-14 84.0 105 50.5
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 1.9e-13 82.4 156 42.3
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 1.6e-12 79.3 77 77.9
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 4.9e-09 67.8 134 39.6
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 6.0e-07 60.8 356 34.0
AagrBONN_evm.TU.Sc2ySwM_344.2987 Anthoceros agrestis HOM05D005307 ORTHO05D006695 1.0e-06 60.1 95 57.9
arahy.Tifrunner.gnm1.ann1.J4KN9P Arachis hypogaea HOM05D047407 ORTHO05D087377 1.3e-06 59.7 49 71.4
arahy.Tifrunner.gnm1.ann1.6LH71N Arachis hypogaea HOM05D005307 ORTHO05D006695 6.7e-06 57.4 136 57.4


User provided reference genes

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