Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 2.0e-83 312.4 155 100.0
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 2.0e-67 259.2 152 84.9
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 4.0e-60 235.0 149 76.5
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 5.8e-43 177.9 146 63.0
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 4.9e-42 174.9 150 58.0
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 6.4e-42 174.5 147 62.6
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 8.4e-42 174.1 148 60.1
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 2.1e-40 169.5 157 52.9
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 1.7e-39 166.4 147 59.2
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 1.7e-39 166.4 147 58.5
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 1.7e-39 166.4 159 52.2
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 3.9e-39 165.2 149 55.7
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 5.1e-39 164.9 148 57.4
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 5.1e-39 164.9 148 57.4
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 8.7e-39 164.1 149 58.4
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 1.1e-38 163.7 148 54.1
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 1.1e-38 163.7 159 52.2
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 1.5e-38 163.3 159 51.6
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 5.6e-38 161.4 151 55.6
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 5.6e-38 161.4 151 55.6
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 5.6e-38 161.4 160 51.9
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 7.3e-38 161.0 147 58.5
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 1.6e-37 159.8 149 55.0
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 2.8e-37 159.1 147 57.1
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 4.8e-37 158.3 147 55.8
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 1.1e-36 157.1 149 55.7
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 1.4e-36 156.8 149 56.4
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 1.4e-36 156.8 148 55.4
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 1.8e-36 156.4 151 53.0
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 5.3e-36 154.8 151 53.6
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 6.9e-36 154.5 149 53.7
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 1.5e-35 153.3 147 57.1
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.5e-35 153.3 150 54.0
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 1.5e-35 153.3 151 53.0
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 3.4e-35 152.1 152 52.0
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 7.6e-35 151.0 147 53.1
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 9.9e-35 150.6 150 55.3
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 9.9e-35 150.6 149 54.4
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 9.9e-35 150.6 148 54.1
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 1.3e-34 150.2 152 50.7
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 1.7e-34 149.8 150 52.7
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 1.7e-34 149.8 151 53.6
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 2.2e-34 149.4 152 53.3
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 2.9e-34 149.1 149 51.7
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 2.9e-34 149.1 153 51.0
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 4.9e-34 148.3 151 49.7
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 6.4e-34 147.9 149 52.3
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 1.1e-33 147.1 148 49.3
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.4e-33 146.7 149 51.0
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 1.4e-33 146.7 149 52.3
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 1.4e-33 146.7 149 52.3
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 1.9e-33 146.4 141 53.9
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.9e-33 146.4 149 49.7
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 1.9e-33 146.4 151 51.0
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 2.4e-33 146.0 152 53.9
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 3.2e-33 145.6 149 51.0
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 5.4e-33 144.8 149 49.7
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 5.4e-33 144.8 146 51.4
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 1.2e-32 143.7 148 52.0
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 2.7e-32 142.5 152 50.0
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 7.9e-32 141.0 150 48.0
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 2.3e-31 139.4 148 50.7
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 3.0e-31 139.0 148 51.4
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 5.1e-31 138.3 158 47.5
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 8.7e-31 137.5 148 50.0
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 8.7e-31 137.5 159 47.8
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 5.6e-30 134.8 149 49.7
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 5.6e-30 134.8 149 51.0
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 2.1e-29 132.9 144 50.7
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 2.8e-29 132.5 120 55.0
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 3.7e-29 132.1 152 46.7
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 6.2e-29 131.3 148 45.9
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 1.1e-28 130.6 152 46.1
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 1.8e-28 129.8 147 49.0
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 3.1e-28 129.0 148 48.6
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 1.2e-27 127.1 148 46.6
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 3.4e-27 125.6 150 47.3
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 4.5e-27 125.2 148 48.6
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 1.0e-26 124.0 145 46.9
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 1.7e-26 123.2 148 45.9
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 1.7e-26 123.2 148 45.3
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 1.7e-26 123.2 148 45.3
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 1.7e-26 123.2 148 45.9
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 4.9e-26 121.7 150 46.0
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 1.1e-25 120.6 152 41.4
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 2.5e-25 119.4 144 44.4
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 2.5e-25 119.4 152 46.1
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 5.5e-25 118.2 148 50.0
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 5.5e-25 118.2 112 54.5
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 5.5e-25 118.2 149 42.3
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 1.6e-24 116.7 151 47.0
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 2.1e-24 116.3 143 43.4
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 2.7e-24 115.9 150 45.3
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 6.0e-24 114.8 147 40.8
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 7.9e-24 114.4 148 42.6
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 1.3e-23 113.6 149 45.6
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 1.3e-23 113.6 146 43.8
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 3.9e-23 112.1 151 44.4
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 1.1e-22 110.5 158 38.0
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 1.5e-22 110.2 150 43.3
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 1.3e-21 107.1 149 43.0
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 1.3e-21 107.1 149 43.0
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 1.3e-21 107.1 124 50.0
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 2.8e-21 105.9 149 38.9
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 1.4e-20 103.6 149 42.3
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 1.8e-20 103.2 145 44.8
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 3.1e-20 102.4 143 38.5
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 2.5e-17 92.8 141 39.7
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 9.3e-17 90.9 146 35.6
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 1.8e-15 86.7 144 38.2
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 5.7e-14 81.6 136 36.0
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 5.0e-10 68.6 94 36.2
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 3.2e-09 65.9 53 52.8
Thhalv10021296m.g Eutrema salsugineum HOM05D002728 ORTHO05D002874 1.2e-08 63.9 148 29.7
Sp3g01980 Schrenkiella parvula HOM05D002728 ORTHO05D002874 1.2e-08 63.9 148 29.7
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 2.7e-08 62.8 115 32.2
BcaB04g21396 Brassica carinata HOM05D002728 ORTHO05D002874 7.9e-08 61.2 128 30.5
Carub.0003s0205 Capsella rubella HOM05D002728 ORTHO05D002874 1.4e-07 60.5 148 28.4
AL3G12370 Arabidopsis lyrata HOM05D002728 ORTHO05D002874 1.8e-07 60.1 148 28.4
BcaNung03547 Brassica carinata HOM05D002728 ORTHO05D002874 3.0e-07 59.3 128 28.9
BNapus_Darmor_BZH_scaffold_129p00170 Brassica napus HOM05D002728 ORTHO05D002874 3.0e-07 59.3 128 28.9
BolC1t05863H Brassica oleracea HOM05D002728 ORTHO05D002874 3.0e-07 59.3 128 28.9
BraA01t04606Z Brassica rapa HOM05D002728 ORTHO05D002874 3.0e-07 59.3 128 28.9
CARHR076950 Cardamine hirsuta HOM05D002728 ORTHO05D002874 3.0e-07 59.3 148 29.1
AT3G02920 Arabidopsis thaliana HOM05D002728 ORTHO05D002874 6.7e-07 58.2 148 29.1
BcaC02g08447 Brassica carinata HOM05D002728 ORTHO05D002874 1.1e-06 57.4 121 29.8
C04p54120 Brassica napus HOM05D002728 ORTHO05D002874 1.1e-06 57.4 121 29.8
BolC4t26964H Brassica oleracea HOM05D002728 ORTHO05D002874 1.1e-06 57.4 121 29.8
BraA04t17490Z Brassica rapa HOM05D002728 ORTHO05D002874 1.1e-06 57.4 121 29.8
BcaB06g27981 Brassica carinata HOM05D002728 ORTHO05D002874 1.5e-06 57.0 121 29.8
A04p18810 Brassica napus HOM05D002728 ORTHO05D002874 1.5e-06 57.0 121 29.8
AL4G14970 Arabidopsis lyrata HOM05D002728 ORTHO05D002874 2.5e-06 56.2 108 31.5
Thhalv10000282m.g Eutrema salsugineum HOM05D002728 ORTHO05D002874 7.4e-06 54.7 108 31.5
Peaxi162Scf01115g00007 Petunia axillaris HOM05D007082 ORTHO05D008895 7.4e-06 54.7 62 51.6
Carub.0004s0383 Capsella rubella HOM05D002728 ORTHO05D002874 9.7e-06 54.3 108 30.6
CARHR117540 Cardamine hirsuta HOM05D002728 ORTHO05D002874 9.7e-06 54.3 108 31.5
Sp4g03490 Schrenkiella parvula HOM05D002728 ORTHO05D002874 9.7e-06 54.3 121 28.9


User provided reference genes

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