Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 0.0e+00 1087.0 559 100.0
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 4.6e-292 1007.3 559 92.8
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 4.7e-268 927.5 559 86.8
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 9.9e-218 760.4 565 73.5
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 2.8e-212 742.3 577 71.9
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 4.4e-210 734.9 605 68.4
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 1.3e-209 733.4 574 70.9
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 5.6e-205 718.0 622 65.4
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 1.6e-204 716.5 594 68.2
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 3.9e-166 589.0 605 56.9
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 2.2e-164 583.2 571 59.0
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 4.8e-164 582.0 607 57.3
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 1.1e-163 580.9 570 58.8
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 1.4e-163 580.5 574 58.7
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 8.5e-161 571.2 599 54.9
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 1.1e-160 570.9 625 54.2
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 3.2e-160 569.3 409 71.9
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 6.7e-158 561.6 453 67.8
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 9.7e-157 557.8 473 65.3
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 3.7e-156 555.8 502 63.3
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 1.8e-155 553.5 588 54.9
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 7.0e-155 551.6 616 54.7
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 5.9e-154 548.5 461 66.2
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 2.2e-153 546.6 588 56.0
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 2.7e-151 539.7 597 54.1
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 6.1e-151 538.5 606 54.0
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 3.0e-150 536.2 607 53.4
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 1.2e-149 534.3 599 54.6
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 1.5e-149 533.9 473 63.0
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 4.4e-149 532.3 622 53.1
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 5.7e-149 531.9 558 55.2
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 7.5e-149 531.6 625 50.6
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 7.5e-149 531.6 357 77.3
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 4.8e-148 528.9 475 62.3
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 4.8e-148 528.9 466 64.4
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 1.4e-147 527.3 467 62.5
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 4.1e-147 525.8 398 69.1
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 7.0e-147 525.0 350 75.7
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 9.1e-147 524.6 366 73.0
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 2.7e-146 523.1 495 60.0
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 2.7e-146 523.1 438 65.5
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 4.5e-146 522.3 475 61.9
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 7.7e-146 521.5 356 75.6
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 7.7e-146 521.5 430 66.0
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 7.7e-146 521.5 503 57.9
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 1.3e-145 520.8 431 66.8
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.3e-145 520.8 495 59.4
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 6.5e-145 518.5 550 56.4
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.9e-144 516.9 366 72.4
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 1.2e-143 514.2 463 63.1
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.1e-143 513.5 352 73.3
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 1.4e-142 510.8 552 56.3
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 3.0e-142 509.6 460 61.7
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 3.0e-142 509.6 464 61.0
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 6.8e-142 508.4 578 52.6
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 1.5e-141 507.3 483 59.2
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 1.5e-141 507.3 464 62.1
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.6e-141 506.5 366 71.3
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 9.8e-141 504.6 338 74.9
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 2.8e-140 503.1 464 61.9
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 1.4e-139 500.7 415 66.5
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 1.7e-137 493.8 426 62.4
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 1.6e-135 487.3 457 61.5
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 2.1e-135 486.9 570 52.6
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 3.6e-135 486.1 437 61.1
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 4.7e-135 485.7 426 62.0
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 1.8e-134 483.8 438 61.2
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 2.3e-134 483.4 437 61.3
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 6.8e-134 481.9 423 62.6
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 4.4e-133 479.2 340 70.0
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 1.3e-132 477.6 324 76.2
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 3.7e-132 476.1 345 71.0
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 3.1e-131 473.0 318 76.4
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 4.1e-131 472.6 582 50.9
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 1.2e-130 471.1 379 67.3
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 1.2e-130 471.1 379 67.3
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 2.7e-130 469.9 366 65.6
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 1.0e-129 468.0 586 49.5
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 2.9e-129 466.5 357 65.8
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 1.1e-128 464.5 563 51.3
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 9.5e-128 461.5 551 52.3
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 1.6e-127 460.7 564 50.4
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 6.1e-127 458.8 343 69.1
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 1.4e-126 457.6 315 76.2
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 2.6e-125 453.4 395 59.5
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 7.5e-125 451.8 363 65.0
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 4.9e-124 449.1 457 56.0
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 7.0e-123 445.3 323 69.3
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 1.1e-120 438.0 347 65.7
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 4.7e-119 432.6 279 79.6
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 1.2e-117 427.9 506 51.6
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 3.2e-115 419.9 492 52.8
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 2.8e-111 406.8 282 74.8
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 1.4e-110 404.4 282 74.8
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 1.4e-110 404.4 282 74.8
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 2.3e-105 387.1 270 74.4
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 4.9e-84 316.2 231 73.2
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 2.4e-78 297.4 330 49.4
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 7.6e-77 292.4 175 81.1
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 4.9e-76 289.7 310 50.0
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 1.9e-72 277.7 331 47.4
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 2.3e-65 254.2 277 50.5
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 4.1e-62 243.4 311 53.1
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 2.2e-60 237.7 176 70.5
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 1.4e-51 208.4 207 57.5
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 2.1e-50 204.5 151 73.5
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 2.2e-47 194.5 285 42.1
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 2.8e-47 194.1 329 38.3
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 1.1e-46 192.2 472 34.1
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 4.5e-45 186.8 287 42.5
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 1.1e-43 182.2 412 34.2
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 5.5e-35 153.3 155 52.3
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 1.3e-31 142.1 289 39.4
CAN.G77.3 Capsicum annuum HOM05D005801 ORTHO05D008555 2.0e-21 108.2 83 65.1
EL10Ac8g19871 Beta vulgaris HOM05D005801 ORTHO05D008555 1.2e-18 99.0 82 63.4
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 1.8e-17 95.1 83 55.4
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 1.8e-17 95.1 83 55.4
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 3.0e-17 94.4 83 54.2
Medtr8g046830 Medicago truncatula HOM05D005801 ORTHO05D008555 2.2e-15 88.2 56 78.6
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 4.9e-15 87.0 70 60.0
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 2.4e-14 84.7 70 58.6
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 2.7e-13 81.3 71 52.1
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 5.9e-13 80.1 56 66.1
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 5.9e-13 80.1 56 66.1
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 1.3e-12 79.0 217 27.2
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 3.3e-11 74.3 64 57.8
BcaB08g34890 Brassica carinata HOM05D005801 ORTHO05D008555 4.7e-10 70.5 81 55.6
BcaB07g33268 Brassica carinata HOM05D005801 ORTHO05D016715 1.1e-06 59.3 54 53.7
BcaB07g33439 Brassica carinata HOM05D005801 ORTHO05D016715 1.1e-06 59.3 54 53.7
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 2.4e-06 58.2 183 31.7


User provided reference genes

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