Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 1.4e-139 499.6 244 100.0
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 9.5e-133 476.9 244 94.3
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 1.4e-120 436.4 245 85.7
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 2.4e-120 435.6 245 84.9
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 4.1e-120 434.9 245 84.9
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 7.1e-120 434.1 245 87.8
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 7.1e-120 434.1 245 84.9
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 1.2e-119 433.3 245 84.9
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 1.6e-119 433.0 245 84.5
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 4.4e-114 414.8 245 80.4
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 7.3e-109 397.5 244 77.0
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 1.3e-108 396.7 244 75.4
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 2.1e-108 396.0 244 75.0
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 2.1e-108 396.0 245 77.6
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 2.8e-108 395.6 244 75.0
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 6.2e-108 394.4 245 75.5
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 1.1e-107 393.7 244 75.4
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 4.0e-107 391.7 244 74.6
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 5.3e-107 391.3 245 75.1
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 6.9e-107 391.0 244 74.2
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 9.0e-107 390.6 242 74.4
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 9.0e-107 390.6 247 75.7
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 2.0e-106 389.4 244 73.0
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 2.6e-106 389.0 245 75.1
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 2.6e-106 389.0 244 75.0
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 4.5e-106 388.3 245 73.9
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 4.5e-106 388.3 245 75.5
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 5.8e-106 387.9 245 75.1
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 7.6e-106 387.5 242 72.7
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 9.9e-106 387.1 245 74.3
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 9.9e-106 387.1 245 74.3
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 1.3e-105 386.7 244 74.2
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 1.7e-105 386.3 244 70.1
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 2.9e-105 385.6 244 73.8
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 2.9e-105 385.6 245 73.5
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 3.8e-105 385.2 242 73.6
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 3.8e-105 385.2 247 74.9
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 6.4e-105 384.4 245 74.3
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 1.4e-104 383.3 239 74.5
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 3.2e-104 382.1 244 72.5
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 3.2e-104 382.1 259 70.7
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 1.6e-103 379.8 242 73.1
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 1.6e-103 379.8 244 74.2
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 2.7e-103 379.0 244 71.3
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 3.5e-103 378.6 242 72.7
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 4.6e-103 378.3 246 72.8
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 6.0e-103 377.9 243 72.0
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 7.9e-103 377.5 247 72.9
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 3.0e-102 375.6 245 75.9
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 3.0e-102 375.6 242 71.9
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 5.1e-102 374.8 242 73.1
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 5.1e-102 374.8 244 70.5
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 6.7e-102 374.4 244 72.5
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 8.7e-102 374.0 244 71.3
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 8.7e-102 374.0 245 71.0
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 1.1e-101 373.6 243 71.2
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 1.5e-101 373.2 244 70.5
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 1.9e-101 372.9 243 71.6
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 1.9e-101 372.9 245 71.4
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 2.5e-101 372.5 242 70.7
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 7.4e-101 370.9 243 71.6
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 7.4e-101 370.9 242 71.5
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 7.4e-101 370.9 245 71.4
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 1.3e-100 370.2 243 71.6
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 1.6e-100 369.8 243 71.6
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 2.1e-100 369.4 243 71.2
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 3.7e-100 368.6 245 71.0
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 8.1e-100 367.5 245 69.0
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 1.8e-99 366.3 244 70.9
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 5.3e-99 364.8 244 68.9
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 9.0e-99 364.0 242 68.6
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 9.0e-99 364.0 242 68.6
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 1.2e-98 363.6 244 68.4
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 2.0e-98 362.8 275 62.2
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 5.8e-98 361.3 285 62.1
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 1.7e-97 359.8 231 73.6
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 2.9e-97 359.0 276 63.0
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 6.4e-97 357.8 244 67.2
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 1.1e-96 357.1 230 73.0
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 3.2e-96 355.5 244 67.2
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 4.2e-96 355.1 296 58.4
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 7.1e-96 354.4 254 65.7
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 3.5e-95 352.1 244 68.0
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 4.6e-95 351.7 244 67.2
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 6.0e-95 351.3 231 69.3
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 3.9e-94 348.6 244 66.8
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 6.7e-94 347.8 229 69.4
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 1.1e-91 340.5 215 74.0
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 3.1e-91 339.0 241 65.1
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 1.2e-90 337.0 328 54.3
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 2.9e-89 332.4 244 66.8
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 4.2e-88 328.6 205 75.1
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 4.6e-87 325.1 211 72.5
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 4.3e-85 318.5 209 70.3
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 1.2e-82 310.5 255 57.3
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 1.2e-82 310.5 206 71.4
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 5.0e-81 305.1 280 53.9
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 4.6e-79 298.5 251 55.8
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.1e-75 287.3 244 58.2
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 5.3e-75 285.0 301 50.8
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.5e-74 283.5 244 55.7
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 2.0e-74 283.1 214 65.4
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 3.0e-70 269.2 317 45.1
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 1.4e-62 243.8 260 48.8
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 2.6e-61 239.6 248 51.6
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 1.2e-53 214.2 253 44.7
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 9.7e-53 211.1 241 46.1
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.8e-51 206.8 147 67.3
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 1.8e-51 206.8 254 42.5
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 4.2e-48 195.7 341 39.6
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.0e-45 186.8 123 70.7
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 7.0e-43 178.3 110 72.7
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 4.2e-40 169.1 123 65.9
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 7.5e-37 158.3 97 75.3
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 9.5e-32 141.4 83 73.5
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 8.0e-23 111.7 84 65.5
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 8.0e-23 111.7 84 65.5
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 8.9e-22 108.2 64 84.4
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 3.4e-21 106.3 59 79.7
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 5.4e-19 99.0 76 65.8
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 1.6e-15 87.4 94 47.9
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 2.2e-12 77.0 52 67.3
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 8.3e-12 75.1 128 39.8
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 1.1e-11 74.7 52 65.4
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 1.1e-11 74.7 52 65.4
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 3.9e-09 66.2 44 68.2
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 3.9e-09 66.2 73 43.8
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 3.3e-08 63.2 37 70.3
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 7.3e-08 62.0 76 46.1
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 1.2e-07 61.2 95 37.9
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.4e-06 57.8 72 44.4
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 1.8e-06 57.4 39 66.7
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 2.4e-06 57.0 77 41.6
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 2.4e-06 57.0 72 44.4
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 2.4e-06 57.0 73 39.7
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 3.1e-06 56.6 75 41.3
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 3.1e-06 56.6 88 36.4
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 4.0e-06 56.2 82 40.2
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 5.2e-06 55.8 65 43.1
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 5.2e-06 55.8 85 40.0
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 5.2e-06 55.8 87 37.9
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 5.2e-06 55.8 73 38.4
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 5.2e-06 55.8 72 44.4
PRCOL_00006618 Prasinoderma coloniale HOM05D000738 ORTHO05D000675 8.9e-06 55.1 56 41.1
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 8.9e-06 55.1 72 43.1


User provided reference genes

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