Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 0.0e+00 1177.2 604 100.0
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 0.0e+00 1152.9 604 97.4
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 0.0e+00 1122.5 604 94.4
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 4.1e-310 1067.4 604 89.6
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 1.5e-309 1065.4 604 89.2
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 2.9e-308 1061.2 595 90.6
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 9.4e-307 1056.2 604 88.4
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 8.0e-306 1053.1 604 88.4
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 1.5e-304 1048.9 604 87.9
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 5.0e-300 1033.9 562 93.2
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 2.0e-285 985.3 601 82.9
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 1.7e-284 982.2 598 82.9
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 3.0e-276 954.9 595 79.8
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 3.0e-276 954.9 603 80.3
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 1.1e-275 953.0 594 79.5
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 3.4e-272 941.4 603 79.1
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 5.8e-272 940.6 603 77.9
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 9.8e-272 939.9 604 77.8
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 1.3e-271 939.5 603 78.4
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 4.9e-271 937.6 627 76.4
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 5.4e-270 934.1 603 77.6
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.2e-269 932.9 605 77.7
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 2.0e-269 932.2 584 80.7
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.3e-268 929.5 603 77.3
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 5.0e-268 927.5 606 77.7
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 6.6e-268 927.2 611 76.9
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 6.6e-268 927.2 595 77.5
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 1.1e-267 926.4 604 76.7
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 1.9e-267 925.6 619 75.9
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 5.6e-267 924.1 606 77.1
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 7.3e-267 923.7 604 77.0
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 7.3e-267 923.7 603 77.3
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.1e-266 922.2 604 77.0
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 4.7e-266 921.0 603 76.1
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 6.2e-266 920.6 603 77.3
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.8e-265 919.1 603 76.6
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.5e-264 916.0 604 76.7
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 3.4e-264 914.8 603 76.9
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 1.7e-263 912.5 603 76.1
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.9e-262 909.1 604 76.3
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 3.2e-262 908.3 604 76.0
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 3.2e-262 908.3 601 76.7
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 4.1e-262 907.9 599 76.8
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 9.2e-262 906.7 570 79.6
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 9.2e-262 906.7 603 77.1
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 2.1e-261 905.6 599 76.6
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 6.0e-261 904.0 604 75.0
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 6.0e-261 904.0 602 75.9
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.3e-260 902.9 616 74.4
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 3.0e-260 901.7 599 76.5
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 3.9e-260 901.4 604 75.7
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 1.5e-259 899.4 603 74.1
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.5e-259 899.4 607 75.5
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 1.5e-259 899.4 601 76.4
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.9e-259 899.0 651 70.8
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 4.3e-259 897.9 599 76.0
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 9.5e-259 896.7 607 75.3
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 9.5e-259 896.7 593 75.5
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 1.6e-258 896.0 603 73.6
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 1.1e-257 893.3 603 73.3
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 3.1e-257 891.7 607 74.8
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 8.9e-257 890.2 606 74.3
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 1.2e-256 889.8 601 73.5
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.5e-256 889.4 606 74.8
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 2.6e-256 888.6 569 77.7
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 2.6e-256 888.6 606 74.4
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 7.6e-256 887.1 618 73.9
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 9.9e-256 886.7 599 73.5
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 9.9e-256 886.7 592 74.8
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 1.7e-255 885.9 601 72.9
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 2.2e-255 885.6 601 73.4
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.2e-255 885.6 606 74.1
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 6.4e-255 884.0 604 74.3
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 8.4e-255 883.6 622 72.3
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 1.9e-254 882.5 590 73.4
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 9.2e-254 880.2 606 73.8
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.2e-253 879.8 603 72.1
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.6e-253 879.4 592 74.5
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 2.7e-253 878.6 603 72.0
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 4.6e-253 877.9 660 68.9
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 1.0e-252 876.7 603 72.0
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 1.0e-252 876.7 603 72.0
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 1.0e-252 876.7 603 72.0
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 1.3e-252 876.3 684 67.5
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 3.0e-252 875.2 603 72.1
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 5.1e-252 874.4 604 74.3
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 8.6e-252 873.6 611 73.3
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.6e-250 869.4 603 73.1
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 2.1e-250 869.0 603 72.6
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 6.2e-250 867.5 602 72.1
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 1.8e-249 865.9 595 72.9
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.1e-249 865.1 603 74.5
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 4.0e-249 864.8 560 77.9
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 9.9e-248 860.1 603 72.5
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 5.1e-244 847.8 627 68.7
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 4.3e-243 844.7 603 69.7
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 4.8e-242 841.3 550 76.7
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.1e-241 840.1 566 76.0
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.8e-241 839.3 554 76.0
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 1.1e-238 830.1 600 72.7
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 2.7e-237 825.5 605 69.4
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 4.6e-237 824.7 584 72.4
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 5.1e-236 821.2 584 71.9
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 5.1e-236 821.2 605 69.1
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 2.8e-234 815.5 614 69.4
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 4.8e-234 814.7 553 74.7
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 2.0e-224 782.7 644 64.4
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 8.2e-218 760.8 478 79.3
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 7.6e-216 754.2 605 65.1
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 1.7e-215 753.1 658 60.0
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 5.5e-214 748.0 604 64.1
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.6e-213 746.5 469 77.6
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 1.1e-211 740.3 601 63.1
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 2.8e-210 735.7 499 74.5
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.3e-207 726.9 496 73.4
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 8.5e-207 724.2 605 62.0
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.9e-198 696.4 544 67.5
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 1.7e-191 673.3 427 77.0
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 1.6e-181 640.2 443 73.8
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.3e-174 615.9 496 65.1
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 7.0e-169 598.2 611 51.7
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 8.6e-167 591.3 593 51.9
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 2.2e-162 576.6 596 50.0
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 3.0e-151 539.7 336 82.1
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 1.1e-150 537.7 441 63.5
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 1.5e-139 500.7 369 68.8
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 2.9e-138 496.5 603 45.3
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 2.7e-136 490.0 418 61.0
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 9.9e-131 471.5 573 44.7
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.5e-126 457.6 530 50.6
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.5e-126 457.6 288 80.9
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 3.3e-118 429.9 319 68.3
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 7.1e-113 412.1 248 80.6
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 1.2e-107 394.8 279 72.8
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.6e-104 384.4 443 50.6
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 3.6e-88 330.1 318 55.7
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 8.8e-87 325.5 276 60.1
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 9.4e-73 278.9 671 31.1
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 2.0e-70 271.2 181 75.1
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 8.3e-69 265.8 553 35.1
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 4.7e-64 250.0 153 78.4
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 1.2e-59 235.3 155 76.1
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 1.3e-58 231.9 149 78.5
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 7.0e-44 183.0 102 87.3
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.7e-43 181.0 163 63.2
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 8.0e-40 169.5 629 26.2
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.8e-32 144.4 96 72.9
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 6.8e-31 139.8 120 55.8
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 3.0e-26 124.4 100 64.0
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.2e-24 119.0 187 38.0
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.4e-23 115.5 100 58.0
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.4e-22 110.5 66 78.8
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 7.1e-20 103.2 94 61.7
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.0e-18 99.4 78 59.0
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 1.9e-17 95.1 72 56.9
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 2.1e-16 91.7 641 23.2
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 9.0e-15 86.3 49 85.7
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 4.4e-14 84.0 48 85.4
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 4.4e-14 84.0 71 53.5
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 2.4e-12 78.2 53 73.6
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 5.4e-12 77.0 99 46.5
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 7.1e-12 76.6 53 71.7
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 1.3e-10 72.4 194 27.8
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 2.3e-10 71.6 61 63.9
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 1.5e-06 58.9 54 57.4
Os08g0323266 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D026010 2.6e-06 58.2 46 60.9


User provided reference genes

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