Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 6.7e-243 843.6 425 100.0
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 4.4e-234 814.3 452 92.0
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 4.7e-228 794.3 452 89.2
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 2.2e-225 785.4 452 88.9
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 9.5e-221 770.0 452 86.1
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 4.4e-218 761.1 452 85.8
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 2.2e-217 758.8 452 85.4
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 2.4e-216 755.4 452 84.7
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 9.2e-216 753.4 452 84.1
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 7.8e-215 750.4 452 83.8
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 8.6e-214 746.9 453 83.7
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 2.6e-194 682.2 452 75.7
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 2.6e-194 682.2 452 75.9
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 5.8e-194 681.0 465 74.0
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 1.2e-191 673.3 452 74.1
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 3.0e-190 668.7 448 75.7
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 1.9e-189 666.0 452 74.8
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 3.3e-189 665.2 452 74.1
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 4.3e-189 664.8 451 73.4
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 7.3e-189 664.1 453 74.0
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 2.8e-188 662.1 452 74.1
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 2.0e-186 656.0 451 72.7
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 1.3e-185 653.3 452 72.6
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 3.8e-185 651.7 451 71.6
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 3.8e-185 651.7 453 72.2
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 2.4e-184 649.0 452 71.0
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 2.4e-184 649.0 452 71.0
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 4.2e-184 648.3 453 71.5
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 4.2e-184 648.3 451 73.2
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 4.2e-184 648.3 486 68.3
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 4.2e-184 648.3 457 73.1
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 2.7e-183 645.6 452 71.2
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 4.6e-183 644.8 466 71.7
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 7.8e-183 644.0 452 71.9
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 7.8e-183 644.0 482 69.1
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 1.7e-182 642.9 452 71.0
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 1.7e-182 642.9 452 71.5
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 2.3e-182 642.5 450 70.2
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 3.0e-182 642.1 452 71.7
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 8.7e-182 640.6 425 75.3
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 1.1e-181 640.2 453 71.1
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 1.9e-181 639.4 485 67.6
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 2.5e-181 639.0 450 72.0
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 1.3e-180 636.7 455 71.2
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 1.6e-180 636.3 450 69.8
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 3.6e-180 635.2 442 71.9
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 2.4e-179 632.5 450 69.6
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.4e-179 632.5 456 71.1
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 3.1e-179 632.1 455 70.1
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 5.3e-179 631.3 453 70.0
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 9.0e-179 630.6 450 69.3
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 2.0e-178 629.4 473 68.3
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 2.0e-178 629.4 450 68.7
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 3.4e-178 628.6 450 69.3
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 3.4e-178 628.6 450 68.7
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 5.8e-178 627.9 450 69.1
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 9.9e-178 627.1 450 69.1
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 2.2e-177 625.9 453 69.8
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 3.8e-177 625.2 451 69.0
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 8.4e-177 624.0 452 69.5
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 1.9e-176 622.9 459 70.4
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 3.2e-176 622.1 450 68.2
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 4.6e-175 618.2 456 68.6
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 4.6e-175 618.2 452 70.1
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 5.1e-174 614.8 417 73.9
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 8.7e-174 614.0 440 68.9
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 2.5e-173 612.5 453 68.0
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 9.6e-173 610.5 475 65.3
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 1.3e-169 600.1 470 63.8
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 3.2e-168 595.5 452 64.8
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 7.1e-168 594.3 455 66.8
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 5.1e-166 588.2 471 65.6
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 1.1e-165 587.0 469 65.0
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 2.5e-165 585.9 411 72.5
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 4.8e-164 581.6 459 65.1
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 1.4e-163 580.1 355 82.8
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 3.1e-163 578.9 452 63.7
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 2.6e-162 575.9 427 68.9
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 1.7e-161 573.2 425 69.4
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 1.1e-160 570.5 467 63.8
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 6.7e-158 561.2 407 70.0
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 9.7e-157 557.4 455 64.2
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 1.6e-151 540.0 534 56.2
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 1.6e-151 540.0 494 60.1
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 1.8e-150 536.6 450 65.1
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 1.5e-149 533.5 357 74.2
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.3e-148 530.4 514 57.6
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 1.8e-147 526.6 426 64.1
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 2.6e-146 522.7 515 55.0
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 8.5e-145 517.7 380 68.2
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 2.5e-144 516.2 399 64.9
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.3e-142 509.6 494 57.7
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 9.7e-141 504.2 325 76.0
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 4.8e-140 501.9 452 60.6
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 6.7e-134 481.5 459 57.1
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.2e-132 476.5 337 71.8
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 5.0e-129 465.3 296 78.7
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 4.7e-127 458.8 455 49.5
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.4e-126 457.2 432 56.2
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 2.7e-122 443.0 296 75.0
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 1.8e-118 430.3 456 47.4
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 4.1e-115 419.1 390 58.5
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 1.3e-108 397.5 502 46.8
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 2.8e-108 396.4 268 73.9
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 3.5e-106 389.4 454 45.8
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 1.5e-96 357.5 446 43.0
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 3.3e-96 356.3 343 58.3
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 4.3e-96 355.9 230 77.0
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 2.8e-95 353.2 446 42.2
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 8.9e-86 321.6 435 45.7
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 9.9e-85 318.2 208 76.0
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.1e-80 304.7 277 59.2
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 1.8e-70 270.8 259 57.5
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 6.4e-68 262.3 325 51.4
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.9e-67 260.8 186 70.4
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 3.2e-59 233.4 283 51.2
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 5.4e-59 232.6 175 68.6
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 1.6e-58 231.1 174 64.9
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 6.0e-58 229.2 231 55.8
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 7.9e-50 202.2 455 29.2
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 1.3e-47 194.9 226 44.7
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 2.1e-47 194.1 457 30.0
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 2.9e-44 183.7 519 27.6
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 2.2e-39 167.5 552 25.5
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 3.3e-32 143.7 131 58.8
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 5.7e-32 142.9 118 60.2
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 1.3e-31 141.7 111 68.5
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 3.1e-22 110.5 70 78.6
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 9.1e-22 109.0 72 66.7
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 2.0e-21 107.8 68 77.9
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.6e-21 107.5 68 77.9
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 5.0e-20 103.2 81 61.7
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 5.5e-19 99.8 175 42.9
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 7.2e-19 99.4 70 60.0
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 7.2e-19 99.4 70 60.0
COL.COLO4_32260 Corchorus olitorius HOM05D005098 ORTHO05D006646 2.4e-14 84.3 61 62.3
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.2e-13 82.0 70 54.3
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 2.6e-13 80.9 52 73.1
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 8.5e-12 75.9 57 63.2
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.9e-11 74.7 59 55.9
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 7.2e-11 72.8 65 56.9
FAN08G2831 Fragaria x ananassa HOM05D005098 ORTHO05D031290 7.2e-11 72.8 68 58.8
Gohir.A04G102400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.6e-10 71.6 49 71.4
FvH4_5g20991 Fragaria vesca HOM05D005098 ORTHO05D031290 4.4e-08 63.5 88 44.3
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 2.2e-07 61.2 31 93.5
SEGI_28984 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.7e-07 60.5 38 68.4
Glyma.13G152440 Glycine max HOM05D005098 ORTHO05D046693 6.3e-07 59.7 41 70.7


User provided reference genes

Program Settings