Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G108500 Phaseolus vulgaris HOM05D001752 ORTHO05D013127 4.8e-67 257.7 129 100.0
Glyma.15G243100 Glycine max HOM05D001752 ORTHO05D005237 8.3e-27 124.0 97 68.0
VMungo1080G1543 Vigna mungo HOM05D001752 ORTHO05D005237 3.1e-26 122.1 95 69.5
Glyma.13G262200 Glycine max HOM05D001752 ORTHO05D005237 5.4e-26 121.3 89 73.0
Phvul.005G064200 Phaseolus vulgaris HOM05D001752 ORTHO05D005237 9.2e-26 120.6 97 68.0
arahy.Tifrunner.gnm1.ann1.1MPM44 Arachis hypogaea HOM05D001752 ORTHO05D005237 2.9e-24 115.5 119 56.3
arahy.Tifrunner.gnm1.ann1.XQ2AST Arachis hypogaea HOM05D001752 ORTHO05D005237 3.8e-24 115.2 119 56.3
Ca_03415_v3 Cicer arietinum L. HOM05D001752 ORTHO05D005237 1.5e-23 113.2 95 64.2
Ca_29740_v3 Cicer arietinum L. HOM05D001752 ORTHO05D005237 1.5e-23 113.2 95 64.2
Lalb_Chr01g0016221 Lupinus albus HOM05D001752 ORTHO05D005237 1.5e-23 113.2 96 62.5
Psat1g006600 Pisum sativum HOM05D001752 ORTHO05D005237 3.3e-23 112.1 95 64.2
Lj3g0019503 Lotus japonicus HOM05D001752 ORTHO05D005237 7.3e-23 110.9 120 58.3
TPR.G6839 Trifolium pratense HOM05D001752 ORTHO05D005237 7.3e-23 110.9 95 64.2
Medtr2g072470 Medicago truncatula HOM05D001752 ORTHO05D005237 3.6e-22 108.6 95 62.1
Actinidia12617 Actinidia chinensis HOM05D001752 ORTHO05D005237 1.2e-20 103.6 94 61.7
Lalb_Chr20g0109041 Lupinus albus HOM05D001752 ORTHO05D005237 1.2e-20 103.6 85 65.9
Actinidia07515 Actinidia chinensis HOM05D001752 ORTHO05D005237 2.0e-20 102.8 98 59.2
AUR62039570 Chenopodium quinoa HOM05D001752 ORTHO05D005237 9.8e-20 100.5 98 58.2
Lj8A144T69 Lonicera japonica HOM05D001752 ORTHO05D005237 9.8e-20 100.5 94 60.6
Dinv26692 Davidia involucrata HOM05D001752 ORTHO05D005237 2.2e-19 99.4 98 58.2
Ciclev10020312m.g Citrus clementina HOM05D001752 ORTHO05D005237 2.9e-19 99.0 97 57.7
MD11G1273800 Malus domestica HOM05D001752 ORTHO05D005237 2.9e-19 99.0 94 58.5
CSS0031554 Camellia sinensis var. sinensis HOM05D001752 ORTHO05D005237 3.7e-19 98.6 114 50.9
Sabra16G0250700 Salix brachista HOM05D001752 ORTHO05D005237 3.7e-19 98.6 98 58.2
Dinv13346 Davidia involucrata HOM05D001752 ORTHO05D005237 6.4e-19 97.8 94 59.6
Eucgr.F03219 Eucalyptus grandis HOM05D001752 ORTHO05D005237 6.4e-19 97.8 98 57.1
MD03G1252200 Malus domestica HOM05D001752 ORTHO05D005237 8.3e-19 97.4 94 58.5
Lj1A821G46 Lonicera japonica HOM05D001752 ORTHO05D005237 1.1e-18 97.1 100 57.0
TAR629G1663 Trochodendron aralioides HOM05D001752 ORTHO05D005237 1.1e-18 97.1 114 50.9
Cpa.g.sc1272.2 Carica papaya HOM05D001752 ORTHO05D005237 1.4e-18 96.7 98 57.1
Gohir.D13G155500 Gossypium hirsutum HOM05D001752 ORTHO05D005237 1.4e-18 96.7 86 62.8
Gorai.013G176100 Gossypium raimondii HOM05D001752 ORTHO05D005237 1.4e-18 96.7 86 62.8
Prupe.4G153300 Prunus persica HOM05D001752 ORTHO05D005237 1.4e-18 96.7 94 57.4
Rhsim06G0187500 Rhododendron simsii HOM05D001752 ORTHO05D005237 1.8e-18 96.3 98 57.1
Cfa019489 Carpinus fangiana HOM05D001752 ORTHO05D005237 2.4e-18 95.9 98 55.1
Hma1.2p1_0713F.1_g207770 Hydrangea macrophylla HOM05D001752 ORTHO05D005237 2.4e-18 95.9 88 62.5
Gohir.A13G151300 Gossypium hirsutum HOM05D001752 ORTHO05D005237 3.2e-18 95.5 86 61.6
GSVIVG01014066001 Vitis vinifera HOM05D001752 ORTHO05D005237 3.2e-18 95.5 98 57.1
Migut.H02035 Erythranthe guttata HOM05D001752 ORTHO05D005237 4.1e-18 95.1 98 56.1
TAR627G1108 Trochodendron aralioides HOM05D001752 ORTHO05D005237 4.1e-18 95.1 98 55.1
Carub.0001s1677 Capsella rubella HOM05D001752 ORTHO05D005237 5.4e-18 94.7 94 58.5
Nitab4.5_0007036g0010 Nicotiana tabacum HOM05D001752 ORTHO05D005237 7.0e-18 94.4 102 56.9
AUR62019685 Chenopodium quinoa HOM05D001752 ORTHO05D005237 9.2e-18 94.0 100 55.0
DCAR_017581 Daucus carota HOM05D001752 ORTHO05D005237 9.2e-18 94.0 110 50.0
Oeu025324.1 Olea europaea HOM05D001752 ORTHO05D005237 9.2e-18 94.0 94 58.5
Peaxi162Scf00111g01144 Petunia axillaris HOM05D001752 ORTHO05D005237 9.2e-18 94.0 88 61.4
QL08p027904 Quercus lobata HOM05D001752 ORTHO05D005237 9.2e-18 94.0 94 57.4
RcHm_v2.0_Chr5g0028851 Rosa chinensis HOM05D001752 ORTHO05D005237 9.2e-18 94.0 94 57.4
CAN.G375.68 Capsicum annuum HOM05D001752 ORTHO05D005237 1.2e-17 93.6 88 61.4
Duzib187G0679 Durio zibethinus HOM05D001752 ORTHO05D005237 1.2e-17 93.6 86 60.5
AL7G51010 Arabidopsis lyrata HOM05D001752 ORTHO05D005237 2.0e-17 92.8 94 57.4
CiPaw.12G046600 Carya illinoinensis HOM05D001752 ORTHO05D005237 2.0e-17 92.8 98 55.1
FvH4_3g17330 Fragaria vesca HOM05D001752 ORTHO05D005237 2.0e-17 92.8 94 57.4
FAN11G0153 Fragaria x ananassa HOM05D001752 ORTHO05D005237 2.0e-17 92.8 94 57.4
FAN16G0271 Fragaria x ananassa HOM05D001752 ORTHO05D005237 2.0e-17 92.8 94 57.4
FAN25G2993 Fragaria x ananassa HOM05D001752 ORTHO05D005237 2.0e-17 92.8 94 57.4
AT1G17050 Arabidopsis thaliana HOM05D001752 ORTHO05D005237 2.7e-17 92.4 94 57.4
CSS0015991 Camellia sinensis var. sinensis HOM05D001752 ORTHO05D005237 2.7e-17 92.4 102 55.9
Potri.001G380500 Populus trichocarpa HOM05D001752 ORTHO05D005237 2.7e-17 92.4 98 55.1
CANSAT56G3507 Cannabis sativa HOM05D001752 ORTHO05D005237 3.5e-17 92.0 98 56.1
Cc05_g10510 Coffea canephora HOM05D001752 ORTHO05D005237 3.5e-17 92.0 98 56.1
Hund10378 Selenicereus undatus HOM05D001752 ORTHO05D005237 3.5e-17 92.0 91 57.1
CSS0035593 Camellia sinensis var. sinensis HOM05D001752 ORTHO05D005237 4.6e-17 91.7 106 53.8
CARHR017580 Cardamine hirsuta HOM05D001752 ORTHO05D005237 4.6e-17 91.7 94 56.4
COL.COLO4_17445 Corchorus olitorius HOM05D001752 ORTHO05D005237 4.6e-17 91.7 86 60.5
Solyc07g061990.3 Solanum lycopersicum HOM05D001752 ORTHO05D005237 4.6e-17 91.7 80 63.8
Sopen07g030260 Solanum pennellii HOM05D001752 ORTHO05D005237 4.6e-17 91.7 80 63.8
Thecc.07G140500 Theobroma cacao HOM05D001752 ORTHO05D005237 4.6e-17 91.7 86 60.5
Aqoxy1G01776 Aquilegia oxysepala HOM05D001752 ORTHO05D005237 5.9e-17 91.3 98 55.1
Manes.15G100400 Manihot esculenta HOM05D001752 ORTHO05D005237 5.9e-17 91.3 90 60.0
PSO541G0989 Papaver somniferum HOM05D001752 ORTHO05D005237 5.9e-17 91.3 88 59.1
Sp1g15170 Schrenkiella parvula HOM05D001752 ORTHO05D005237 5.9e-17 91.3 105 54.3
PGSC0003DMG400007081 Solanum tuberosum HOM05D001752 ORTHO05D005237 5.9e-17 91.3 80 63.8
TWI39G0829 Tripterygium wilfordii HOM05D001752 ORTHO05D005237 5.9e-17 91.3 86 59.3
BcaC05g25678 Brassica carinata HOM05D001752 ORTHO05D005237 7.8e-17 90.9 94 55.3
A06p12950 Brassica napus HOM05D001752 ORTHO05D005237 7.8e-17 90.9 94 55.3
C05p15370 Brassica napus HOM05D001752 ORTHO05D005237 7.8e-17 90.9 94 55.3
BolC5t30243H Brassica oleracea HOM05D001752 ORTHO05D005237 7.8e-17 90.9 94 55.3
BraA06t24454Z Brassica rapa HOM05D001752 ORTHO05D005237 7.8e-17 90.9 94 55.3
Sp5g33600 Schrenkiella parvula HOM05D001752 ORTHO05D005237 7.8e-17 90.9 93 57.0
Sc03g0010800 Simmondsia chinensis HOM05D001752 ORTHO05D005237 7.8e-17 90.9 80 62.5
MSTRG.14259 Avicennia marina HOM05D001752 ORTHO05D005237 1.0e-16 90.5 88 59.1
CARHR072000 Cardamine hirsuta HOM05D001752 ORTHO05D005237 1.0e-16 90.5 103 54.4
A07p43780 Brassica napus HOM05D001752 ORTHO05D005237 1.7e-16 89.7 88 59.1
BraA07t31886Z Brassica rapa HOM05D001752 ORTHO05D005237 1.7e-16 89.7 88 59.1
Thhalv10007715m.g Eutrema salsugineum HOM05D001752 ORTHO05D005237 2.3e-16 89.4 105 52.4
THA.LOC104812299 Tarenaya hassleriana HOM05D001752 ORTHO05D005237 2.3e-16 89.4 94 56.4
Aa31LG7G1880 Aethionema arabicum HOM05D001752 ORTHO05D005237 3.0e-16 89.0 88 58.0
Potri.011G101200 Populus trichocarpa HOM05D001752 ORTHO05D005237 3.0e-16 89.0 85 57.6
EL10Ac4g08456 Beta vulgaris HOM05D001752 ORTHO05D005237 3.9e-16 88.6 99 54.5
C06p52420 Brassica napus HOM05D001752 ORTHO05D005237 3.9e-16 88.6 94 55.3
ECA234G2248 Erigeron canadensis HOM05D001752 ORTHO05D005237 3.9e-16 88.6 88 58.0
Potri.011G099500 Populus trichocarpa HOM05D001752 ORTHO05D005237 3.9e-16 88.6 85 57.6
Potri.011G101301 Populus trichocarpa HOM05D001752 ORTHO05D005237 3.9e-16 88.6 85 57.6
TAR624G0293 Trochodendron aralioides HOM05D001752 ORTHO05D013127 3.9e-16 88.6 85 58.8
MSTRG.14994 Avicennia marina HOM05D001752 ORTHO05D005237 5.0e-16 88.2 86 58.1
THA.LOC104813987 Tarenaya hassleriana HOM05D001752 ORTHO05D005237 5.0e-16 88.2 116 48.3
MSTRG.6698 Avicennia marina HOM05D001752 ORTHO05D005237 6.6e-16 87.8 94 55.3
Thhalv10018616m.g Eutrema salsugineum HOM05D001752 ORTHO05D005237 6.6e-16 87.8 103 52.4
Nn3g20662 Nelumbo nucifera HOM05D001752 ORTHO05D005237 6.6e-16 87.8 94 48.9
PSO675G8508 Papaver somniferum HOM05D001752 ORTHO05D005237 6.6e-16 87.8 88 58.0
Nn4g26511 Nelumbo nucifera HOM05D001752 ORTHO05D005237 8.6e-16 87.4 86 54.7
SalBow7G0098 Salvia bowleyana HOM05D001752 ORTHO05D005237 8.6e-16 87.4 83 60.2
SalBow7G0347 Salvia bowleyana HOM05D001752 ORTHO05D005237 8.6e-16 87.4 83 60.2
BcaB02g06681 Brassica carinata HOM05D001752 ORTHO05D005237 1.1e-15 87.0 94 53.2
Carub.0002s2536 Capsella rubella HOM05D001752 ORTHO05D005237 1.1e-15 87.0 93 55.9
BcaC08g47421 Brassica carinata HOM05D001752 ORTHO05D005237 1.5e-15 86.7 94 54.3
AL2G38910 Arabidopsis lyrata HOM05D001752 ORTHO05D005237 1.9e-15 86.3 93 53.8
AT1G78510 Arabidopsis thaliana HOM05D001752 ORTHO05D005237 1.9e-15 86.3 97 53.6
HanXRQChr12g0373361 Helianthus annuus HOM05D001752 ORTHO05D005237 1.9e-15 86.3 83 60.2
THA.LOC104810419 Tarenaya hassleriana HOM05D001752 ORTHO05D005237 1.9e-15 86.3 94 53.2
BolC6t40261H Brassica oleracea HOM05D001752 ORTHO05D005237 2.5e-15 85.9 94 54.3
PGR031G0641 Punica granatum HOM05D001752 ORTHO05D005237 3.3e-15 85.5 88 54.5
SGA_v2.0_scaffold4G02146 Striga asiatica HOM05D001752 ORTHO05D005237 3.3e-15 85.5 88 54.5
Migut.M00682 Erythranthe guttata HOM05D001752 ORTHO05D005237 5.6e-15 84.7 88 55.7
THA.LOC104822586 Tarenaya hassleriana HOM05D001752 ORTHO05D005237 5.6e-15 84.7 85 55.3
Oeu050685.1 Olea europaea HOM05D001752 ORTHO05D005237 7.3e-15 84.3 132 44.7
HanXRQChr10g0305631 Helianthus annuus HOM05D001752 ORTHO05D005237 1.2e-14 83.6 69 66.7
SGA_v2.0_scaffold130G34245 Striga asiatica HOM05D001752 ORTHO05D005237 3.6e-14 82.0 115 44.3
HPP92_010049 Vanilla planifolia HOM05D001752 ORTHO05D005237 3.6e-14 82.0 92 45.7
unitig_46.g18306 Utricularia gibba HOM05D001752 ORTHO05D005237 4.7e-14 81.6 78 61.5
Os12g0271700 Oryza sativa ssp. japonica HOM05D001752 ORTHO05D005237 8.0e-14 80.9 100 50.0
unitig_37.g12550 Utricularia gibba HOM05D001752 ORTHO05D005237 8.0e-14 80.9 79 59.5
MBI10_g03528_MAGBIO Magnolia biondii HOM05D001752 ORTHO05D005237 1.1e-13 80.5 80 55.0
vmacro11993 Vaccinium macrocarpon HOM05D001752 ORTHO05D005237 1.1e-13 80.5 102 51.0
MELO3C016140.2 Cucumis melo HOM05D001752 ORTHO05D005237 1.4e-13 80.1 91 50.5
CsaV3_4G007960 Cucumis sativus L. HOM05D001752 ORTHO05D005237 1.4e-13 80.1 91 50.5
ATR1153G023 Amborella trichopoda HOM05D001752 ORTHO05D005237 1.8e-13 79.7 80 53.8
ClCG07G010380 Citrullus lanatus HOM05D001752 ORTHO05D005237 2.3e-13 79.3 95 48.4
Sed0013121 Sechium edule HOM05D001752 ORTHO05D005237 3.1e-13 79.0 92 47.8
Zm00001eb297120 Zea mays HOM05D001752 ORTHO05D005237 3.1e-13 79.0 84 53.6
Haze_08466 Corylus avellana HOM05D001752 ORTHO05D005237 4.0e-13 78.6 129 42.6
Os05g0582300 Oryza sativa ssp. japonica HOM05D001752 ORTHO05D005237 4.0e-13 78.6 84 53.6
SEGI_06571 Sequoiadendron giganteum HOM05D001752 ORTHO05D005237 5.2e-13 78.2 80 55.0
Sed0021402 Sechium edule HOM05D001752 ORTHO05D005237 6.8e-13 77.8 95 47.4
Zm00001eb004050 Zea mays HOM05D001752 ORTHO05D005237 1.5e-12 76.6 83 51.8
CDE02G0912 Ceratophyllum demersum HOM05D001752 ORTHO05D005237 7.5e-12 74.3 98 44.9
CDE09G0513 Ceratophyllum demersum HOM05D001752 ORTHO05D005237 7.5e-12 74.3 94 45.7
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.4e-10 70.1 51 70.6
Mapoly0058s0036 Marchantia polymorpha HOM05D001752 ORTHO05D005237 2.4e-10 69.3 91 46.2
Lj1A821T48 Lonicera japonica HOM05D001752 ORTHO05D013127 3.2e-10 68.9 83 50.6
SMO201G0139 Selaginella moellendorffii HOM05D001752 ORTHO05D005237 3.2e-10 68.9 93 43.0
DCAR_019630 Daucus carota HOM05D001752 ORTHO05D005237 9.2e-10 67.4 47 72.3
Pp3c16_16550 Physcomitrium patens HOM05D001752 ORTHO05D005237 9.2e-10 67.4 83 45.8
BcaC09g49151 Brassica carinata HOM05D001852 ORTHO05D013127 1.6e-09 66.6 77 48.1
BolC1t04168H Brassica oleracea HOM05D001852 ORTHO05D013127 1.6e-09 66.6 77 48.1
Pp3c27_1880 Physcomitrium patens HOM05D001752 ORTHO05D005237 6.0e-09 64.7 67 52.2
MCO05G629 Micromonas commoda HOM05D001752 ORTHO05D005237 3.0e-08 62.4 108 37.0
BcaC02g10252 Brassica carinata HOM05D001852 ORTHO05D013127 1.9e-07 59.7 77 44.2
C04p31080 Brassica napus HOM05D001852 ORTHO05D013127 1.9e-07 59.7 77 44.2
BolC4t24645H Brassica oleracea HOM05D001852 ORTHO05D013127 1.9e-07 59.7 77 44.2
CBR_g22317 Chara braunii HOM05D001752 ORTHO05D005237 1.9e-07 59.7 38 76.3
C07p22800 Brassica napus HOM05D001852 ORTHO05D013127 3.3e-07 58.9 79 46.8
arahy.Tifrunner.gnm1.ann1.B9URUB Arachis hypogaea HOM05D015962 ORTHO05D083682 2.1e-06 56.2 37 73.0
AagrBONN_evm.TU.Sc2ySwM_228.153 Anthoceros agrestis HOM05D001752 ORTHO05D005237 6.2e-06 54.7 34 73.5


User provided reference genes

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