Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 2.1e-155 552.4 285 100.0
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 6.1e-155 550.8 285 99.6
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 3.3e-153 545.0 285 97.9
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 7.4e-153 543.9 287 98.3
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 4.5e-150 534.6 291 96.6
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 1.3e-149 533.1 296 92.9
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 2.1e-147 525.8 289 94.1
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.4e-146 523.1 296 92.9
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 2.0e-145 519.2 272 95.2
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 9.7e-145 516.9 273 94.9
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 1.3e-144 516.5 273 93.4
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 1.7e-144 516.2 285 91.6
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 1.7e-144 516.2 285 91.6
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 2.2e-144 515.8 273 94.5
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 2.8e-144 515.4 291 92.8
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 1.4e-143 513.1 289 90.3
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 1.8e-143 512.7 285 88.8
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.1e-143 511.9 287 90.9
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 4.1e-143 511.5 273 94.9
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 5.3e-143 511.1 293 91.5
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 6.9e-143 510.8 287 90.9
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 6.9e-143 510.8 275 93.1
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 1.2e-142 510.0 273 93.0
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.2e-142 510.0 298 90.3
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.2e-142 510.0 296 88.5
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 5.9e-142 507.7 274 93.8
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 7.7e-142 507.3 273 92.7
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 2.2e-141 505.8 285 89.5
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 3.8e-141 505.0 275 92.7
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.8e-141 505.0 296 88.9
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 5.0e-141 504.6 273 92.7
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 6.5e-141 504.2 293 89.8
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 1.1e-140 503.4 273 91.9
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 1.1e-140 503.4 273 91.9
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.4e-140 503.1 299 87.3
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.4e-140 503.1 298 88.6
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 1.9e-140 502.7 273 92.7
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 3.2e-140 501.9 285 87.7
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 4.2e-140 501.5 290 90.3
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.6e-139 499.6 285 88.4
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.1e-139 499.2 317 84.9
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 6.1e-139 497.7 287 88.2
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 8.0e-139 497.3 272 92.6
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 1.0e-138 496.9 273 90.1
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 2.3e-138 495.7 273 89.7
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 5.2e-138 494.6 322 82.9
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 4.4e-137 491.5 286 86.0
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 1.3e-136 490.0 286 86.0
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.7e-136 489.6 283 88.3
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 4.8e-136 488.0 286 87.8
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 6.3e-136 487.6 297 86.9
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 8.2e-136 487.3 292 84.9
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 1.1e-135 486.9 267 90.3
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 1.1e-135 486.9 328 77.7
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.4e-135 486.5 285 85.6
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.4e-135 485.7 288 85.1
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 4.1e-135 485.0 286 85.0
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 7.7e-134 480.7 287 85.7
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 1.3e-133 479.9 285 84.9
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.7e-133 479.6 296 87.2
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 3.8e-133 478.4 283 83.7
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 3.8e-133 478.4 283 83.7
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 3.8e-133 478.4 287 87.1
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 8.5e-133 477.2 289 83.4
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 1.5e-132 476.5 285 83.9
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 5.5e-132 474.6 290 84.5
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 9.4e-132 473.8 273 87.2
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 2.7e-131 472.2 293 84.0
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 3.6e-131 471.9 299 83.6
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 1.4e-130 469.9 277 86.3
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 1.8e-130 469.5 277 86.3
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 5.2e-130 468.0 293 80.5
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 1.2e-129 466.8 285 83.2
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 1.5e-129 466.5 287 82.9
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 1.5e-129 466.5 291 83.5
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 1.5e-129 466.5 291 83.5
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 1.5e-129 466.5 292 82.9
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 1.5e-129 466.5 297 83.2
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 2.0e-129 466.1 273 82.4
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 3.3e-129 465.3 304 79.6
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 1.3e-128 463.4 292 83.2
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 1.7e-128 463.0 285 84.9
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 6.3e-128 461.1 308 79.5
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 1.1e-127 460.3 320 76.9
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 2.4e-127 459.1 334 76.3
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 3.1e-127 458.8 273 83.2
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 4.1e-127 458.4 285 79.6
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 5.3e-127 458.0 294 81.3
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 5.3e-127 458.0 273 84.2
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 5.3e-127 458.0 286 80.4
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 9.1e-127 457.2 290 82.8
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 2.0e-126 456.1 258 88.4
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 2.0e-126 456.1 310 76.1
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 2.0e-126 456.1 287 79.1
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 2.7e-126 455.7 282 83.0
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 1.3e-125 453.4 291 82.5
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 3.8e-125 451.8 309 75.4
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 3.8e-125 451.8 323 76.8
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 3.2e-124 448.7 273 83.9
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 3.2e-124 448.7 273 83.9
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.4e-119 433.3 264 77.3
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 1.4e-119 433.3 296 80.7
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 2.4e-119 432.6 276 77.5
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 5.4e-119 431.4 276 77.2
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 5.4e-119 431.4 276 77.5
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 1.7e-117 426.4 222 95.9
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.9e-117 425.6 285 74.0
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 2.8e-115 419.1 233 90.1
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 1.6e-110 403.3 224 88.4
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.4e-106 390.2 264 72.3
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 2.7e-102 375.9 291 71.1
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 4.6e-102 375.2 293 70.6
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 7.8e-102 374.4 273 72.5
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 1.7e-101 373.2 290 71.0
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 5.6e-100 368.2 240 77.5
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 6.2e-99 364.8 205 89.3
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.1e-94 349.7 239 71.1
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 3.5e-94 349.0 225 83.1
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 2.1e-91 339.7 280 62.9
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 3.6e-91 339.0 286 62.6
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 8.1e-91 337.8 291 60.5
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 2.0e-89 333.2 198 86.4
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 5.8e-89 331.6 246 68.7
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 3.5e-86 322.4 181 90.1
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 7.8e-86 321.2 293 58.4
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 1.3e-85 320.5 190 85.3
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 1.3e-85 320.5 267 63.7
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.0e-82 308.9 214 70.1
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 7.3e-76 288.1 181 79.0
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 3.6e-75 285.8 255 58.8
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 8.4e-72 274.6 246 65.4
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 1.7e-69 266.9 190 70.5
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.3e-67 260.8 147 90.5
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 6.9e-50 201.8 108 93.5
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.2e-48 196.8 110 89.1
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 2.9e-48 196.4 116 86.2
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 3.2e-47 193.0 116 80.2
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 3.7e-43 179.5 107 81.3
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 1.3e-40 171.0 104 79.8
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 1.7e-40 170.6 136 73.5
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 6.5e-40 168.7 260 39.6
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.2e-38 164.5 95 92.6
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 1.1e-36 157.9 94 83.0
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 9.1e-34 148.3 104 79.8
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 1.5e-33 147.5 94 77.7
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 2.0e-33 147.1 268 33.6
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 7.2e-31 138.7 227 40.1
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.8e-29 134.0 258 34.5
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 3.0e-29 133.3 118 63.6
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 3.0e-29 133.3 118 63.6
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 5.1e-29 132.5 118 64.4
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 6.7e-29 132.1 186 44.1
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 8.8e-29 131.7 105 69.5
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 3.3e-28 129.8 247 34.0
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 4.4e-28 129.4 118 61.9
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 5.7e-28 129.0 118 62.7
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 9.7e-28 128.3 66 92.4
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 6.3e-27 125.6 118 61.9
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 1.8e-26 124.0 118 61.0
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 9.4e-23 111.7 155 41.9
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 1.2e-22 111.3 87 66.7
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 1.4e-21 107.8 155 41.9
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 2.6e-20 103.6 83 66.3
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.2e-17 94.7 57 86.0
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 6.1e-14 82.4 46 78.3
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 1.0e-13 81.6 53 73.6


User provided reference genes

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