Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 2395.5 1183 100.0
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 2087.0 1177 87.8
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1874.0 1190 78.6
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1864.4 1184 78.3
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1862.4 1187 78.4
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1832.4 1176 77.9
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1746.5 1174 73.3
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1709.5 1187 72.0
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1685.2 1055 79.1
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1673.3 1054 78.7
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1512.3 1181 64.4
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1471.8 1185 63.0
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1464.1 1188 60.4
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1460.3 1396 55.6
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1458.0 1178 60.9
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1455.3 1178 62.1
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1444.1 1190 61.3
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1440.2 1174 62.1
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1439.5 1131 64.3
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1432.5 1184 62.5
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1427.9 1177 60.4
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1426.8 1196 60.5
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1424.1 1184 61.6
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1424.1 1168 60.1
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1414.8 1185 60.3
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1410.6 1169 59.3
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1403.7 1181 59.6
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1393.6 1182 59.5
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1384.8 1184 59.0
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1384.4 1180 60.5
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1382.1 1182 58.5
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1375.1 1209 56.9
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1362.4 1179 59.5
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1360.5 1179 59.5
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1347.4 1177 58.9
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1332.4 1181 58.3
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1332.0 1166 56.7
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1330.5 1179 58.0
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1329.7 1168 56.6
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1324.3 1182 57.2
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1323.9 1218 56.0
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1322.4 1167 56.8
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1315.4 1182 55.9
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1313.9 1202 56.1
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1306.6 1170 56.4
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1305.8 1170 56.6
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1304.7 1169 56.6
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1302.0 1158 56.9
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1299.3 1181 56.2
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1298.9 1169 56.4
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1295.8 1168 56.3
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1294.6 1181 55.9
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1294.3 1168 55.5
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1290.4 1178 54.9
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1287.3 1181 55.3
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1279.6 1165 55.2
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1279.2 1169 55.3
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1275.4 1390 50.6
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1270.4 1168 54.7
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1268.1 1175 53.9
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1262.7 1166 54.0
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1262.7 1168 55.7
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1261.5 1175 55.4
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1256.5 1219 53.8
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1253.0 1169 55.7
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1250.0 1168 54.4
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1249.6 1167 54.5
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1248.4 1162 54.8
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1248.4 1178 53.8
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1247.6 1174 54.1
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1246.5 1180 54.2
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1241.9 1168 53.9
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1229.5 1038 59.3
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1201.8 1135 54.4
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1189.5 1169 51.9
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1181.8 1166 52.0
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1173.7 1183 50.5
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1129.4 1175 50.0
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 4.0e-311 1071.6 1188 47.9
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 1.2e-308 1063.5 1185 47.1
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 3.5e-305 1052.0 1115 49.8
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 1.3e-304 1050.0 1201 46.5
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 2.9e-304 1048.9 1124 49.4
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 5.0e-296 1021.5 1177 45.5
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.5e-295 1020.0 1109 50.1
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 1.2e-294 1016.9 1148 48.1
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 2.7e-273 946.0 836 58.6
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 3.5e-265 919.1 761 62.2
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 3.1e-237 826.2 1109 42.8
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 3.8e-235 819.3 704 58.2
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 9.7e-231 804.7 786 54.2
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 3.7e-206 723.0 763 49.7
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 7.7e-196 688.7 1187 36.5
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 5.9e-180 636.0 585 54.4
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 1.6e-169 601.3 1193 35.2
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 1.2e-151 542.0 443 63.2
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 6.2e-145 519.6 633 46.3
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 3.9e-139 500.4 466 54.5
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 9.3e-133 479.2 1120 31.8
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 3.2e-125 454.1 845 34.9
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 4.3e-122 443.7 393 55.2
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 1.3e-115 422.2 405 53.1
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 2.3e-107 394.8 528 41.5
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 4.2e-93 347.4 420 41.2
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 1.7e-86 325.5 299 54.5
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 2.3e-83 315.1 217 68.7
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 4.3e-69 267.7 238 60.9
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 1.8e-67 262.3 184 65.2
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 5.8e-58 230.7 203 57.1
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 3.7e-57 228.0 177 67.2
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 7.0e-56 223.8 1120 25.5
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 4.7e-52 211.1 307 38.1
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 2.9e-33 148.7 123 55.3
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 2.1e-31 142.5 323 31.0
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 6.6e-30 137.5 157 45.9
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 3.1e-19 102.1 64 73.4
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 1.5e-18 99.8 377 26.3
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 2.9e-17 95.5 53 81.1
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 4.9e-17 94.7 491 24.6
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 1.4e-16 93.2 62 67.7
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 1.9e-16 92.8 64 71.9
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 4.2e-16 91.7 107 50.5
arahy.Tifrunner.gnm1.ann1.5RG0UU Arachis hypogaea HOM05D006523 ORTHO05D008212 4.6e-15 88.2 110 50.9
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 1.8e-14 86.3 79 53.2
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 2.8e-12 79.0 53 73.6
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 7.6e-10 70.9 46 67.4
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 2.9e-09 68.9 46 67.4
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 9.3e-08 63.9 115 40.0
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 2.3e-06 59.3 517 22.8


User provided reference genes

Program Settings